| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is entC [H]
Identifier: 28572232
GI number: 28572232
Start: 52002
End: 53279
Strand: Reverse
Name: entC [H]
Synonym: TW062
Alternate gene names: 28572232
Gene position: 53279-52002 (Counterclockwise)
Preceding gene: 28572236
Following gene: 28572226
Centisome position: 5.75
GC content: 43.82
Gene sequence:
>1278_bases ATGCTTCCAATTGAAGTTGAAATAACAAGAATTGGAAATATGGATCGTAGCGACTTCAAGCGACAGTATATTCGCAAAGT ATTGTCTTGGGATTTCGTATATTGTACACACAGCACGATGATGAGAACACAGGGCCGCGTGCTAAAAATAAATCTCGATT CCTATTCCGCCGAGGCTAGATTTGAGGCAGCCGAGTCGCTGATAAATGAAATACATACAAAGATACAGTACACGAGCGAA AATCTCAATCCGATTGGCCTTATCGTGCTATTCGGATTTACATTTTCGCCATATTCTGCCAGGCCGAGTTTTCTTGCAAT ACCAGAGCAAATGTTTTTTTGGAGCGACGGGGTTGCCTGGAAAATAGATGCAACGATTTGTCATAACCTCTCGGAGCCCT CTCGAATTTTCAAATGGCCAAAGAGTATTAGCTTTAAAATGGGAGATTTTAGACAAGAGGATTATAAACATGCCATTACC AATGTGGTAAACAAACTTTTAAATGCAGATATATCAAAGGTAGTTTTGGCGCGGGACATTATCGCAGAAATACATGATGA TTTTGACCCTGAAGCACACGCAATCGACCTTGATGAGGCGATACAGAGACTTATGAATACGGCAAACGGCACGGTGTTTG TATTTGATGGACTATTCGGCGCTTCACCCGAGGTGCTGCTGAGAACAGATGGTAACTCTGGTTTTGAGGTCTCCATTCTT GCAGGCAGCATGTCTGCCAATCACCCCAAACATGTAATACATAATTGTGCGGCAAGCCCCCCTTACAAGGCTCTCGATGA GACATATCTCGATGAAAAGCTAAGGCTTGAACATTCCTTTGCGCTTAACCCAACCTTGGAGCGACTTAGCACACTCATGA ACACAGCGCCAACGGTGAATTCCTACAAAATCAGGAGATTTACACACATAACCCATGTAGCGAGCTTTATATCCGGCACA TTTAAGCCAAATATCTCCCCCTTGCGCGCATTGAGTCATATTCATCCAACAGGAGCAATTGCTGGAGAGCCCAGAGAAAG AGCGCTGGAAATAATCAAAGAGATAGAGCCATTTGACCGCGAGCTATACGGCGGGGCAATAGGGTGGATTGGGCAAGATA GCTCATGTGAGTTCACATTACCCATTCGATGTGCGCAGCTAAACAGGGGGCATATAAAAGCTTTTGCCGGGTGTGGAATA GTGAAGTCAAGCATCCCGCAAAAAGAACTTGAAGAAAGCACATTAAAGTTCAAAACAATTATTGACGCAATATCCTAG
Upstream 100 bases:
>100_bases CCCAAAGCGAAGAAAGTATAGTCCCAGGTGCAAAAACTTTACACATCGGTTTATTTTCTAAATAACAAAATACTTGAACC GAGTTACGACGAGGGTTACC
Downstream 100 bases:
>100_bases CGGTTCCGACTTGCTCGAATTTTCACACTCAGAATAATTGGGGATCCTGTAAAGCTGTGTTGTGAGCGTATGGACTTTTG CAAGAATCGCCGGTAGGTTG
Product: chorismate binding enzyme
Products: NA
Alternate protein names: Isochorismate mutase [H]
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MLPIEVEITRIGNMDRSDFKRQYIRKVLSWDFVYCTHSTMMRTQGRVLKINLDSYSAEARFEAAESLINEIHTKIQYTSE NLNPIGLIVLFGFTFSPYSARPSFLAIPEQMFFWSDGVAWKIDATICHNLSEPSRIFKWPKSISFKMGDFRQEDYKHAIT NVVNKLLNADISKVVLARDIIAEIHDDFDPEAHAIDLDEAIQRLMNTANGTVFVFDGLFGASPEVLLRTDGNSGFEVSIL AGSMSANHPKHVIHNCAASPPYKALDETYLDEKLRLEHSFALNPTLERLSTLMNTAPTVNSYKIRRFTHITHVASFISGT FKPNISPLRALSHIHPTGAIAGEPRERALEIIKEIEPFDRELYGGAIGWIGQDSSCEFTLPIRCAQLNRGHIKAFAGCGI VKSSIPQKELEESTLKFKTIIDAIS
Sequences:
>Translated_425_residues MLPIEVEITRIGNMDRSDFKRQYIRKVLSWDFVYCTHSTMMRTQGRVLKINLDSYSAEARFEAAESLINEIHTKIQYTSE NLNPIGLIVLFGFTFSPYSARPSFLAIPEQMFFWSDGVAWKIDATICHNLSEPSRIFKWPKSISFKMGDFRQEDYKHAIT NVVNKLLNADISKVVLARDIIAEIHDDFDPEAHAIDLDEAIQRLMNTANGTVFVFDGLFGASPEVLLRTDGNSGFEVSIL AGSMSANHPKHVIHNCAASPPYKALDETYLDEKLRLEHSFALNPTLERLSTLMNTAPTVNSYKIRRFTHITHVASFISGT FKPNISPLRALSHIHPTGAIAGEPRERALEIIKEIEPFDRELYGGAIGWIGQDSSCEFTLPIRCAQLNRGHIKAFAGCGI VKSSIPQKELEESTLKFKTIIDAIS >Mature_425_residues MLPIEVEITRIGNMDRSDFKRQYIRKVLSWDFVYCTHSTMMRTQGRVLKINLDSYSAEARFEAAESLINEIHTKIQYTSE NLNPIGLIVLFGFTFSPYSARPSFLAIPEQMFFWSDGVAWKIDATICHNLSEPSRIFKWPKSISFKMGDFRQEDYKHAIT NVVNKLLNADISKVVLARDIIAEIHDDFDPEAHAIDLDEAIQRLMNTANGTVFVFDGLFGASPEVLLRTDGNSGFEVSIL AGSMSANHPKHVIHNCAASPPYKALDETYLDEKLRLEHSFALNPTLERLSTLMNTAPTVNSYKIRRFTHITHVASFISGT FKPNISPLRALSHIHPTGAIAGEPRERALEIIKEIEPFDRELYGGAIGWIGQDSSCEFTLPIRCAQLNRGHIKAFAGCGI VKSSIPQKELEESTLKFKTIIDAIS
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: COG1169
COG function: function code HQ; Isochorismate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isochorismate synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786809, Length=277, Percent_Identity=31.4079422382672, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI1787518, Length=216, Percent_Identity=27.3148148148148, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI87082077, Length=262, Percent_Identity=27.0992366412214, Blast_Score=78, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6320935, Length=227, Percent_Identity=27.3127753303965, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR015890 - InterPro: IPR004561 [H]
Pfam domain/function: PF00425 Chorismate_bind [H]
EC number: =5.4.4.2 [H]
Molecular weight: Translated: 47810; Mature: 47810
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPIEVEITRIGNMDRSDFKRQYIRKVLSWDFVYCTHSTMMRTQGRVLKINLDSYSAEAR CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHH FEAAESLINEIHTKIQYTSENLNPIGLIVLFGFTFSPYSARPSFLAIPEQMFFWSDGVAW HHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCHHHEEECCCCEE KIDATICHNLSEPSRIFKWPKSISFKMGDFRQEDYKHAITNVVNKLLNADISKVVLARDI EEEHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IAEIHDDFDPEAHAIDLDEAIQRLMNTANGTVFVFDGLFGASPEVLLRTDGNSGFEVSIL HHHHHCCCCCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEE AGSMSANHPKHVIHNCAASPPYKALDETYLDEKLRLEHSFALNPTLERLSTLMNTAPTVN ECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC SYKIRRFTHITHVASFISGTFKPNISPLRALSHIHPTGAIAGEPRERALEIIKEIEPFDR CEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHH ELYGGAIGWIGQDSSCEFTLPIRCAQLNRGHIKAFAGCGIVKSSIPQKELEESTLKFKTI HHHCCEEEECCCCCCCEEEECEEEECCCCCCEEHHHCCCHHHHCCCHHHHHHHHHHHHHH IDAIS HHHCC >Mature Secondary Structure MLPIEVEITRIGNMDRSDFKRQYIRKVLSWDFVYCTHSTMMRTQGRVLKINLDSYSAEAR CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHH FEAAESLINEIHTKIQYTSENLNPIGLIVLFGFTFSPYSARPSFLAIPEQMFFWSDGVAW HHHHHHHHHHHHHHEEECCCCCCCEEEEEEECCCCCCCCCCCCEEECCHHHEEECCCCEE KIDATICHNLSEPSRIFKWPKSISFKMGDFRQEDYKHAITNVVNKLLNADISKVVLARDI EEEHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IAEIHDDFDPEAHAIDLDEAIQRLMNTANGTVFVFDGLFGASPEVLLRTDGNSGFEVSIL HHHHHCCCCCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEE AGSMSANHPKHVIHNCAASPPYKALDETYLDEKLRLEHSFALNPTLERLSTLMNTAPTVN ECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC SYKIRRFTHITHVASFISGTFKPNISPLRALSHIHPTGAIAGEPRERALEIIKEIEPFDR CEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHH ELYGGAIGWIGQDSSCEFTLPIRCAQLNRGHIKAFAGCGIVKSSIPQKELEESTLKFKTI HHHCCEEEECCCCCCCEEEECEEEECCCCCCEEHHHCCCHHHHCCCHHHHHHHHHHHHHH IDAIS HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]