Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572218

Identifier: 28572218

GI number: 28572218

Start: 40845

End: 40934

Strand: Direct

Name: 28572218

Synonym: TW045

Alternate gene names: NA

Gene position: 40845-40934 (Clockwise)

Preceding gene: 28572217

Following gene: 28572219

Centisome position: 4.41

GC content: 44.44

Gene sequence:

>90_bases
ATGGCGTTATTCGTGGTGATAACACTTCTTATTGGTGCCGGATTGTTTCTTCTGCGTGATTTGCTGCTTCCTGGTGATGA
GCAAATCTAG

Upstream 100 bases:

>100_bases
AACGCTGTAAAAACCTTTGACCCTGAAGGATGTCTATACGGCGCATCCAGTGGTGCAGTTGGCGGTTTTGACCTGGTTTA
ATGACACCCTCTTGCAGGGT

Downstream 100 bases:

>100_bases
CTATATACAATTTGTGCCACTTGCACCTCAATCGCTATACCCTTTTTAGGGCGATGTGCTCTTTCCGATGCGCTCTTTCT
ACAGTGAGGTCGTTGCGCGC

Product: small membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 29; Mature: 28

Protein sequence:

>29_residues
MALFVVITLLIGAGLFLLRDLLLPGDEQI

Sequences:

>Translated_29_residues
MALFVVITLLIGAGLFLLRDLLLPGDEQI
>Mature_28_residues
ALFVVITLLIGAGLFLLRDLLLPGDEQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 3155; Mature: 3024

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFVVITLLIGAGLFLLRDLLLPGDEQI
CHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ALFVVITLLIGAGLFLLRDLLLPGDEQI
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA