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The map label for this gene is ybaK [C]

Identifier: 28379171

GI number: 28379171

Start: 2367245

End: 2367748

Strand: Direct

Name: ybaK [C]

Synonym: lp_2662

Alternate gene names: 28379171

Gene position: 2367245-2367748 (Clockwise)

Preceding gene: 28379166

Following gene: 28379172

Centisome position: 71.56

GC content: 43.25

Gene sequence:

>504_bases
ATGTCAAAAAAGAAGAAAAAAGATCAATTAGGTAAAACACTTGTTGAAAAGATTTTGGATAAAGCAAATATCAGCTATCA
ACAATATGAATTTCCAACCGAAGCGGAAGGCGACGTTCAACAATTACAAGTCGACCACCTCGGTGTTGACGAACATCATA
TCTACAAGACCTTAGCGCTGATTGGTAACAAGACTGGTCCCGTCGTCGGTGTCTTGCCGTTAGATGAGCACCTCAGCTAT
AAAAAATTGGCTAAGCTATCCGGCAACAAAAAAGTTGGCATGATTCCATTAAAGGACTTGGAACGAACTACCGGATACCA
ACACGGCGCCAACACACCAGTTGGTATTTGGGAAACTAAGAAGTTTCCCATCTACTTAGACGAGACCGCTAAGCAGCAAG
GTAAGATTCTCGTATCTTCGGGTAAAATCGGGCGTTCAATTGAAATCGACGCTGATGATCTACGCAAGCTCGTGCACGGC
ACTTTTGGTCCAATAACGGAGTAG

Upstream 100 bases:

>100_bases
TCATACCTCAAGTATAGCAGAATTAATGGCGTTTGGGTGAATTGTTCCGGTCCATTTATAAAATTGGACCGTATTTTTAA
TAAATGTGAGGTTAACAATA

Downstream 100 bases:

>100_bases
CCTCGTGGATAACTTGATCAAGAATAACGGCATCGTCTTGCTGGTCATCATTGTTTTACCCGGACTATTCGCTTGGTTAC
TGACGATTATCAACCGACAA

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSKKKKKDQLGKTLVEKILDKANISYQQYEFPTEAEGDVQQLQVDHLGVDEHHIYKTLALIGNKTGPVVGVLPLDEHLSY
KKLAKLSGNKKVGMIPLKDLERTTGYQHGANTPVGIWETKKFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHG
TFGPITE

Sequences:

>Translated_167_residues
MSKKKKKDQLGKTLVEKILDKANISYQQYEFPTEAEGDVQQLQVDHLGVDEHHIYKTLALIGNKTGPVVGVLPLDEHLSY
KKLAKLSGNKKVGMIPLKDLERTTGYQHGANTPVGIWETKKFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHG
TFGPITE
>Mature_166_residues
SKKKKKDQLGKTLVEKILDKANISYQQYEFPTEAEGDVQQLQVDHLGVDEHHIYKTLALIGNKTGPVVGVLPLDEHLSYK
KLAKLSGNKKVGMIPLKDLERTTGYQHGANTPVGIWETKKFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHGT
FGPITE

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=35.7142857142857, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 18592; Mature: 18460

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKKKDQLGKTLVEKILDKANISYQQYEFPTEAEGDVQQLQVDHLGVDEHHIYKTLAL
CCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHEEHHHCCCCHHHHHHHHHH
IGNKTGPVVGVLPLDEHLSYKKLAKLSGNKKVGMIPLKDLERTTGYQHGANTPVGIWETK
HCCCCCCEEEEEECHHHCCHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCEEECC
KFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHGTFGPITE
CCCEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKKKKKDQLGKTLVEKILDKANISYQQYEFPTEAEGDVQQLQVDHLGVDEHHIYKTLAL
CCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHEEHHHCCCCHHHHHHHHHH
IGNKTGPVVGVLPLDEHLSYKKLAKLSGNKKVGMIPLKDLERTTGYQHGANTPVGIWETK
HCCCCCCEEEEEECHHHCCHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCEEECC
KFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHGTFGPITE
CCCEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]