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The map label for this gene is rpoZ

Identifier: 28378313

GI number: 28378313

Start: 1466199

End: 1466411

Strand: Direct

Name: rpoZ

Synonym: lp_1613

Alternate gene names: 28378313

Gene position: 1466199-1466411 (Clockwise)

Preceding gene: 28378312

Following gene: 28378314

Centisome position: 44.32

GC content: 42.72

Gene sequence:

>213_bases
ATGATCTTATATCCATCAGTTGATGACTTATTGAAGCAAGTTAATTCGCGTTACTCATTGATTATGTTAGCTAGCAAGCG
GGCCCATGAATTGGACGCTGGTGCAGCACCAATGCTTAGCGAATACAAATCGGTTAAAACGATTGGTCGGGCCATGGAAG
AAATTGCGGCCGGTGACTTAATGATCGATCCAGATGAAACTGACAAAGATTAG

Upstream 100 bases:

>100_bases
CGCTAGCTGCTGAACGAATCAAGGCTATTATTCGTAGTGAACGGTTTAGTGTTAAACGGGTCATGCCCGAGTATGAAGAA
ATGTTAGGAGATGCGGAATC

Downstream 100 bases:

>100_bases
TAACAAAACGGTGTGCTGAGCCAGCTGGGGCTTGGCACTTTTTTTATGAAGAATGACGCGGACGTTCAGCTTCACGTTAC
TGTCGATTCTTGATACAATT

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MILYPSVDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDLMIDPDETDKD

Sequences:

>Translated_70_residues
MILYPSVDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDLMIDPDETDKD
>Mature_70_residues
MILYPSVDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDLMIDPDETDKD

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_LACPL (Q88WL6)

Other databases:

- EMBL:   AL935256
- RefSeq:   NP_785205.1
- GeneID:   1063677
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1613
- NMPDR:   fig|220668.1.peg.1339
- HOGENOM:   HBG742204
- OMA:   NIGHALE
- ProtClustDB:   PRK00392
- BioCyc:   LPLA220668:LP_1613-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7743; Mature: 7743

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILYPSVDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDL
CCCCCCHHHHHHHHCCCCEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
MIDPDETDKD
EECCCCCCCC
>Mature Secondary Structure
MILYPSVDDLLKQVNSRYSLIMLASKRAHELDAGAAPMLSEYKSVKTIGRAMEEIAAGDL
CCCCCCHHHHHHHHCCCCEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
MIDPDETDKD
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566