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The map label for this gene is sufD [H]

Identifier: 28378186

GI number: 28378186

Start: 1345938

End: 1347239

Strand: Direct

Name: sufD [H]

Synonym: lp_1469

Alternate gene names: 28378186

Gene position: 1345938-1347239 (Clockwise)

Preceding gene: 28378185

Following gene: 28378187

Centisome position: 40.68

GC content: 48.46

Gene sequence:

>1302_bases
ATGGAAGCAACTGCTGATTATGAAACTATCAAAACAACGCTAGCTGCGGCTGCTAACGAACATGGTGAACCGCACTGGCT
CGTTGAACGCCGTTTAGCGGCTTTAGATGCGATGCAAGGCCTAGCGGTTCCCAAAGCTGATCGCTTTAGTATTTGCGACT
GGCCACTGACGCCCACCGACCAACCACTAAAGTTCAGTCGTTCGGATCGAACTTTAGCAACTGATGTAACGGCTGAAGCT
GGTCATATCCAAATCGTACAAGTTGGGCAGACAACGGTGACCGTCAATTTGCCTGATGAACTAGATGATCAGGGTGTCAT
TTTGACCGATATGTTCACGGCTTTTCGCGAACATCCACAGCTAACTGAAAAACATTTTATGGGCAAAGTCGTCAAAACTG
ACGAGGACCGGTTGACCAGCTACCATACCGCGTTTTTGAACGCCGGGGTCTTCCTCTATGTTCCTAAAGGGGTTACTGTC
AAAGAACCAATTGAGATCACCACGATTCAGGATAGTACCCGCGTGCAACCGTTAATTAGTCACGTCTTGATTGTGGCTGA
ACAAGACAGCCATTTCGCAGTAACTCAGCACTTGACAACGAAGGGTGACGTCGATAATATCGCCAACTGTGTTGTAGAAA
TTTTGGCACGGGCTGACAGTGAAGTGCATTTTTCAGCGTTCGATGAACTCGGGGCCAACACGACCGCTTACTTGAATCGG
CGGGCCGCGATCAGTCGGGGAGCCAAAGTCGATTGGGCTATCGGGATGATGAATAACGGTAACACTTTCGGGGATTTTGA
CTCGGAACTGATCAGTGAAGGCGCCAAATCCGATGCCAAGGTCATCACAGTGACGACCAAAGCCCAGGATGTCTGTGTTA
ATACGCGGGTCACCAACCGTGGTAAGAAGACGGACGGCAATATCGTACAACGTGGGGTCATTATGGAAAAGTCTAACCTG
ATTTTTAACGGAATCGGTCACATTATTCACGGGGCCTCCGGTGCACATGCTGAACAGGAAAACCGGGTTTTGATGATGTC
TGATGATGCCCATGGTGACGCGAACCCGATTCTATTGATCGATGAAAATGACGTGTTAGCTGGACATGCAGCAAGTGTTG
GTCAAATTGATCAAAATCAAATGTACTATTTGATGAGTCGCGGGATTGATAAACCACAGGCCCAACGGTTGGTTATTCGG
GGCTTCTTAAGTACCGTGATTGGTGCGATCCCATCGAAGACTGTCCGGACGCGCTTAACGAACACGATTGAAAGGAAGCT
TGAAGATGGCATCCAATTTTGA

Upstream 100 bases:

>100_bases
CTTAGCAAAGACCCTTGAAAAAGAAGGTTATGCTGGTTTACGTGACGATTTGAACATTGATGTCAAACTTGTTGACGACG
AAGATTAGGGGGTGGCAGTA

Downstream 100 bases:

>100_bases
GACGTTACGGTCAGATTTTCCCATTCTAAACCAACAAGTGAATGATGAACGACTTGTCTACCTAGATAATGCGGCGACTG
CGCAGCGCCCCAACCAAGTC

Product: ABC transporter component (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MEATADYETIKTTLAAAANEHGEPHWLVERRLAALDAMQGLAVPKADRFSICDWPLTPTDQPLKFSRSDRTLATDVTAEA
GHIQIVQVGQTTVTVNLPDELDDQGVILTDMFTAFREHPQLTEKHFMGKVVKTDEDRLTSYHTAFLNAGVFLYVPKGVTV
KEPIEITTIQDSTRVQPLISHVLIVAEQDSHFAVTQHLTTKGDVDNIANCVVEILARADSEVHFSAFDELGANTTAYLNR
RAAISRGAKVDWAIGMMNNGNTFGDFDSELISEGAKSDAKVITVTTKAQDVCVNTRVTNRGKKTDGNIVQRGVIMEKSNL
IFNGIGHIIHGASGAHAEQENRVLMMSDDAHGDANPILLIDENDVLAGHAASVGQIDQNQMYYLMSRGIDKPQAQRLVIR
GFLSTVIGAIPSKTVRTRLTNTIERKLEDGIQF

Sequences:

>Translated_433_residues
MEATADYETIKTTLAAAANEHGEPHWLVERRLAALDAMQGLAVPKADRFSICDWPLTPTDQPLKFSRSDRTLATDVTAEA
GHIQIVQVGQTTVTVNLPDELDDQGVILTDMFTAFREHPQLTEKHFMGKVVKTDEDRLTSYHTAFLNAGVFLYVPKGVTV
KEPIEITTIQDSTRVQPLISHVLIVAEQDSHFAVTQHLTTKGDVDNIANCVVEILARADSEVHFSAFDELGANTTAYLNR
RAAISRGAKVDWAIGMMNNGNTFGDFDSELISEGAKSDAKVITVTTKAQDVCVNTRVTNRGKKTDGNIVQRGVIMEKSNL
IFNGIGHIIHGASGAHAEQENRVLMMSDDAHGDANPILLIDENDVLAGHAASVGQIDQNQMYYLMSRGIDKPQAQRLVIR
GFLSTVIGAIPSKTVRTRLTNTIERKLEDGIQF
>Mature_433_residues
MEATADYETIKTTLAAAANEHGEPHWLVERRLAALDAMQGLAVPKADRFSICDWPLTPTDQPLKFSRSDRTLATDVTAEA
GHIQIVQVGQTTVTVNLPDELDDQGVILTDMFTAFREHPQLTEKHFMGKVVKTDEDRLTSYHTAFLNAGVFLYVPKGVTV
KEPIEITTIQDSTRVQPLISHVLIVAEQDSHFAVTQHLTTKGDVDNIANCVVEILARADSEVHFSAFDELGANTTAYLNR
RAAISRGAKVDWAIGMMNNGNTFGDFDSELISEGAKSDAKVITVTTKAQDVCVNTRVTNRGKKTDGNIVQRGVIMEKSNL
IFNGIGHIIHGASGAHAEQENRVLMMSDDAHGDANPILLIDENDVLAGHAASVGQIDQNQMYYLMSRGIDKPQAQRLVIR
GFLSTVIGAIPSKTVRTRLTNTIERKLEDGIQF

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=434, Percent_Identity=21.6589861751152, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787971, Length=159, Percent_Identity=27.0440251572327, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47471; Mature: 47471

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEATADYETIKTTLAAAANEHGEPHWLVERRLAALDAMQGLAVPKADRFSICDWPLTPTD
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCC
QPLKFSRSDRTLATDVTAEAGHIQIVQVGQTTVTVNLPDELDDQGVILTDMFTAFREHPQ
CCCEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCCCCCEEHHHHHHHHHCCCC
LTEKHFMGKVVKTDEDRLTSYHTAFLNAGVFLYVPKGVTVKEPIEITTIQDSTRVQPLIS
HHHHHHHCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHH
HVLIVAEQDSHFAVTQHLTTKGDVDNIANCVVEILARADSEVHFSAFDELGANTTAYLNR
EEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHH
RAAISRGAKVDWAIGMMNNGNTFGDFDSELISEGAKSDAKVITVTTKAQDVCVNTRVTNR
HHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCEEEEECEECCC
GKKTDGNIVQRGVIMEKSNLIFNGIGHIIHGASGAHAEQENRVLMMSDDAHGDANPILLI
CCCCCCCHHHCCEEEECCCEEEECHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEE
DENDVLAGHAASVGQIDQNQMYYLMSRGIDKPQAQRLVIRGFLSTVIGAIPSKTVRTRLT
CCCCEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NTIERKLEDGIQF
HHHHHHHHHCCCC
>Mature Secondary Structure
MEATADYETIKTTLAAAANEHGEPHWLVERRLAALDAMQGLAVPKADRFSICDWPLTPTD
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCC
QPLKFSRSDRTLATDVTAEAGHIQIVQVGQTTVTVNLPDELDDQGVILTDMFTAFREHPQ
CCCEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCCCCCCEEHHHHHHHHHCCCC
LTEKHFMGKVVKTDEDRLTSYHTAFLNAGVFLYVPKGVTVKEPIEITTIQDSTRVQPLIS
HHHHHHHCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCHHHHHHH
HVLIVAEQDSHFAVTQHLTTKGDVDNIANCVVEILARADSEVHFSAFDELGANTTAYLNR
EEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHH
RAAISRGAKVDWAIGMMNNGNTFGDFDSELISEGAKSDAKVITVTTKAQDVCVNTRVTNR
HHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCEEEEECEECCC
GKKTDGNIVQRGVIMEKSNLIFNGIGHIIHGASGAHAEQENRVLMMSDDAHGDANPILLI
CCCCCCCHHHCCEEEECCCEEEECHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEE
DENDVLAGHAASVGQIDQNQMYYLMSRGIDKPQAQRLVIRGFLSTVIGAIPSKTVRTRLT
CCCCEEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NTIERKLEDGIQF
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]