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The map label for this gene is yfhH [C]

Identifier: 28377344

GI number: 28377344

Start: 396196

End: 396942

Strand: Direct

Name: yfhH [C]

Synonym: lp_0442

Alternate gene names: 28377344

Gene position: 396196-396942 (Clockwise)

Preceding gene: 28377343

Following gene: 28377345

Centisome position: 11.98

GC content: 41.77

Gene sequence:

>747_bases
GTGGCATTCTTTGGCTATAAGGATATCGATAAGTTATCTGGAGTAGATTTAGCAATTTATCGATTTATTGTGGAGCATGA
TGAGCAAATCCCGTATATGCGAGTCCGTGAGTTAGCGCGGGGTGCGCACGTTTCTAATTCGTCAGTCATGCGCTTTATTC
GTAAAATTGGGTATGATAGTTTTCCAGAATTTAAAGTATCGCTACGCAGTGAAACGCCCATTCAAAAGCCGGATGCTCCA
GGTATTCAGTTTGTTCAACCGAGTGCCTTTCCTGCAGATATTACTAAGATTATTCGACTGGCAGCTCAGTTGATGGTCAA
TGCGGATAATATCGTGTTTGTTGGTATCGGAGCATCAGCGGCGTTGGGCGAGTATGCTTCACGTCAAACGTCATCATTAG
GATTTAATAGTTATGTCGTCAAGGATCCTTTCTATCCACTATTACCACAATTACGTAATACTAGTAATAACGTTTTGGTG
GCAGTGTCAGTCTCCGGTCAGACGTCTGAGTTGGTTGAAATGCTTAATGACTTTGTGAATAATCCTGAAGTCAATATTAT
TAGTATTACGAGTAATCTTGAGAGTACGATTGCTCGAATGAGTCGATATGCGTTAACGTATCGGGCGACTGAGGAGCGTA
TTCATCAATATTATGACTTAACTAGTCAAGTGCCATGCCTTTACATTATTGAGGCGCTGTTACGGGAACTTCGTCATCAA
GAAGTTGTCCAACACCGGTTTGAGTAA

Upstream 100 bases:

>100_bases
TTAAAAAATGAAAAAGCTTGAATGCTAGATGTTTTTTAGAAGCGGTTACGCATTTATGGTAATCTAGTGAATAGATTATT
AGATAGGGTGGTGGCTAACC

Downstream 100 bases:

>100_bases
GCCTTGAATTTATTTAGCCAGCAAACGTCATTCCTGCAAAGCAGGCATATCAATGCTAAAATTAAAAGCATTCAATCCAA
AAGTTAAACTAGTGATAAGG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAFFGYKDIDKLSGVDLAIYRFIVEHDEQIPYMRVRELARGAHVSNSSVMRFIRKIGYDSFPEFKVSLRSETPIQKPDAP
GIQFVQPSAFPADITKIIRLAAQLMVNADNIVFVGIGASAALGEYASRQTSSLGFNSYVVKDPFYPLLPQLRNTSNNVLV
AVSVSGQTSELVEMLNDFVNNPEVNIISITSNLESTIARMSRYALTYRATEERIHQYYDLTSQVPCLYIIEALLRELRHQ
EVVQHRFE

Sequences:

>Translated_248_residues
MAFFGYKDIDKLSGVDLAIYRFIVEHDEQIPYMRVRELARGAHVSNSSVMRFIRKIGYDSFPEFKVSLRSETPIQKPDAP
GIQFVQPSAFPADITKIIRLAAQLMVNADNIVFVGIGASAALGEYASRQTSSLGFNSYVVKDPFYPLLPQLRNTSNNVLV
AVSVSGQTSELVEMLNDFVNNPEVNIISITSNLESTIARMSRYALTYRATEERIHQYYDLTSQVPCLYIIEALLRELRHQ
EVVQHRFE
>Mature_247_residues
AFFGYKDIDKLSGVDLAIYRFIVEHDEQIPYMRVRELARGAHVSNSSVMRFIRKIGYDSFPEFKVSLRSETPIQKPDAPG
IQFVQPSAFPADITKIIRLAAQLMVNADNIVFVGIGASAALGEYASRQTSSLGFNSYVVKDPFYPLLPQLRNTSNNVLVA
VSVSGQTSELVEMLNDFVNNPEVNIISITSNLESTIARMSRYALTYRATEERIHQYYDLTSQVPCLYIIEALLRELRHQE
VVQHRFE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 28090; Mature: 27959

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR ; PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFGYKDIDKLSGVDLAIYRFIVEHDEQIPYMRVRELARGAHVSNSSVMRFIRKIGYDS
CCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
FPEFKVSLRSETPIQKPDAPGIQFVQPSAFPADITKIIRLAAQLMVNADNIVFVGIGASA
CCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHH
ALGEYASRQTSSLGFNSYVVKDPFYPLLPQLRNTSNNVLVAVSVSGQTSELVEMLNDFVN
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC
NPEVNIISITSNLESTIARMSRYALTYRATEERIHQYYDLTSQVPCLYIIEALLRELRHQ
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EVVQHRFE
HHHHHHCC
>Mature Secondary Structure 
AFFGYKDIDKLSGVDLAIYRFIVEHDEQIPYMRVRELARGAHVSNSSVMRFIRKIGYDS
CCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
FPEFKVSLRSETPIQKPDAPGIQFVQPSAFPADITKIIRLAAQLMVNADNIVFVGIGASA
CCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHH
ALGEYASRQTSSLGFNSYVVKDPFYPLLPQLRNTSNNVLVAVSVSGQTSELVEMLNDFVN
HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC
NPEVNIISITSNLESTIARMSRYALTYRATEERIHQYYDLTSQVPCLYIIEALLRELRHQ
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EVVQHRFE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]