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The map label for this gene is plnC [H]

Identifier: 28377321

GI number: 28377321

Start: 373034

End: 373777

Strand: Direct

Name: plnC [H]

Synonym: lp_0417

Alternate gene names: 28377321

Gene position: 373034-373777 (Clockwise)

Preceding gene: 28377320

Following gene: 28377322

Centisome position: 11.28

GC content: 32.66

Gene sequence:

>744_bases
GTGTTTCCAATTTATTTATTAGAAGATAACGAGGCCCAAAGAGTAGAGTATATAAGTATTATAAAGAATATAATCATGAT
TAAAGAATATGATATGCAGTTGGTGGTGGCGACAGGAGATTTACAAGAGTTAATGAATAATGTTATGAATTCTAAAGAAG
GGCTGTTTTTCTTGGATATGGAAATTGGGGAACAAACTCAGGCCGGGTTGAATTTAGCAGATGAAATTCGGCAGCAGTTA
CCTTGTGCACAAATTGTATTTATTACAACTCATGAAGAGTTATCTTTTTTGACACTGGAGCGGCGGATTGCACCGTTGGA
TTATATTTTGAAAGAACAAGGCCTTGATGATATTAAGCAAAAAATAGTTAAGGATATTGATGCAACTCAAACTATTCTCA
AGACAGAAACTGTGCAGCATAAGGATATTTTAGGTTATAAAATCGGAACGCGTTTCTTTTCAGTTCCTATTAATGATGTT
ATTATGCTGAGCACTAATAAAGAACGACCGGGTAGTATTAGGCTGACTGCCAAAAATAAAGTGGCAGATTTTCCAGGTAA
TTTAAATAGTTTTGAAAATAAATACTCACAATTTTTTAGGTGTGATAAAAGTTCATTGGTAAATATAGATTATGTTGATA
GTTATGATTATCAAAAAAAAGAGCTTACCATGATAGATAACATTAAGTGCAGTGTTTCGTATAGAAAGTCTCGGGAGCTT
AACAAAATATTGAAAAAGAAATAG

Upstream 100 bases:

>100_bases
TGTGCGGGATCTTGTTGAACAGCAGAAGGGTTTCTATATGGATATTGAAACCAAGAAAAATTATGTCACAATGACGTTAA
TTGTTACGGAGGATAAATAA

Downstream 100 bases:

>100_bases
GAAACTTATCTTTTATAGCCAGGGCAATGAATCGTAGTATCTTGTTTTGAGATAGACTGCTTTTCATGGTAAGAGCAAGC
AAACAATTATATTTTTGACA

Product: response regulator PlnC, activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MFPIYLLEDNEAQRVEYISIIKNIIMIKEYDMQLVVATGDLQELMNNVMNSKEGLFFLDMEIGEQTQAGLNLADEIRQQL
PCAQIVFITTHEELSFLTLERRIAPLDYILKEQGLDDIKQKIVKDIDATQTILKTETVQHKDILGYKIGTRFFSVPINDV
IMLSTNKERPGSIRLTAKNKVADFPGNLNSFENKYSQFFRCDKSSLVNIDYVDSYDYQKKELTMIDNIKCSVSYRKSREL
NKILKKK

Sequences:

>Translated_247_residues
MFPIYLLEDNEAQRVEYISIIKNIIMIKEYDMQLVVATGDLQELMNNVMNSKEGLFFLDMEIGEQTQAGLNLADEIRQQL
PCAQIVFITTHEELSFLTLERRIAPLDYILKEQGLDDIKQKIVKDIDATQTILKTETVQHKDILGYKIGTRFFSVPINDV
IMLSTNKERPGSIRLTAKNKVADFPGNLNSFENKYSQFFRCDKSSLVNIDYVDSYDYQKKELTMIDNIKCSVSYRKSREL
NKILKKK
>Mature_247_residues
MFPIYLLEDNEAQRVEYISIIKNIIMIKEYDMQLVVATGDLQELMNNVMNSKEGLFFLDMEIGEQTQAGLNLADEIRQQL
PCAQIVFITTHEELSFLTLERRIAPLDYILKEQGLDDIKQKIVKDIDATQTILKTETVQHKDILGYKIGTRFFSVPINDV
IMLSTNKERPGSIRLTAKNKVADFPGNLNSFENKYSQFFRCDKSSLVNIDYVDSYDYQKKELTMIDNIKCSVSYRKSREL
NKILKKK

Specific function: Required for high-level post-exponential phase expression of a series of secreted proteins [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28643; Mature: 28643

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPIYLLEDNEAQRVEYISIIKNIIMIKEYDMQLVVATGDLQELMNNVMNSKEGLFFLDM
CCEEEEEECCCHHHHHHHHHHHHHHHEEECCEEEEEEECCHHHHHHHHHCCCCCEEEEEE
EIGEQTQAGLNLADEIRQQLPCAQIVFITTHEELSFLTLERRIAPLDYILKEQGLDDIKQ
CCCCCHHHCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHCHHHHHHHHCCHHHHHH
KIVKDIDATQTILKTETVQHKDILGYKIGTRFFSVPINDVIMLSTNKERPGSIRLTAKNK
HHHHHHHHHHHHHHHHHHCHHHHHEEEECCEEEECCCCCEEEEECCCCCCCEEEEEECCC
VADFPGNLNSFENKYSQFFRCDKSSLVNIDYVDSYDYQKKELTMIDNIKCSVSYRKSREL
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHEEEECCEEEEEEHHHHHHH
NKILKKK
HHHHHCC
>Mature Secondary Structure
MFPIYLLEDNEAQRVEYISIIKNIIMIKEYDMQLVVATGDLQELMNNVMNSKEGLFFLDM
CCEEEEEECCCHHHHHHHHHHHHHHHEEECCEEEEEEECCHHHHHHHHHCCCCCEEEEEE
EIGEQTQAGLNLADEIRQQLPCAQIVFITTHEELSFLTLERRIAPLDYILKEQGLDDIKQ
CCCCCHHHCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHCHHHHHHHHCCHHHHHH
KIVKDIDATQTILKTETVQHKDILGYKIGTRFFSVPINDVIMLSTNKERPGSIRLTAKNK
HHHHHHHHHHHHHHHHHHCHHHHHEEEECCEEEECCCCCEEEEECCCCCCCEEEEEECCC
VADFPGNLNSFENKYSQFFRCDKSSLVNIDYVDSYDYQKKELTMIDNIKCSVSYRKSREL
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHEEEECCEEEEEEHHHHHHH
NKILKKK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA