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The map label for this gene is plnD [H]

Identifier: 28377322

GI number: 28377322

Start: 373896

End: 374639

Strand: Direct

Name: plnD [H]

Synonym: lp_0418

Alternate gene names: 28377322

Gene position: 373896-374639 (Clockwise)

Preceding gene: 28377321

Following gene: 28377326

Centisome position: 11.3

GC content: 37.37

Gene sequence:

>744_bases
TTGTTTCCAATTTATTTATACGAGGATAATGCTGAGCAAAGAGATAATTATTGTAAGACCGTCAATAATACAATTATGAT
TAATGAGTTTGCAATGGAGCTTAGGGTTGCAACGGATGATCAAAAAATAATTCTAGCAGATTTGAATCAACAACAAGATG
GCCTTTTCTTTTTGGATATGGAAATTGGTGAGGACAAACAGACTGGACTTGAATTAGCCAGTCGAATTCGGGCAACGATA
CCATTGGCTAAAATAGTTTTCATTACAACACACGATGAGCTATCGTTTGTAACTCTGGAACGGCGGATTGCACCGTTGGA
TTATATTTTGAAAGACCAGTCTGCTGACCTAATTACGCAAAGGATTATTAAGGACATCAATGTAGTACAGAACGAATTAA
AAAAGACTAATAGTCAGCGCAAAGATGTTTTTAACTATAAGTTAGGAACGCGATACTTTTCACTCGCATTAGATGATGTG
ATTTTGTTGAGTACATCTAAACTGCGTCCGGGCAGCGTACAACTCCATGCTATTAATAAGGTTGCTGAGTTCCCAGGAAA
TTTAAATGCGCTCGAAGAAAAGTATCCGCAATTTTTCCGATGCGATAAGAGCTCGCTGGTAAATTTAAATCATTTGCGAA
GTTTTGACTATAAAGAAAAAGAGTTGTTGCTCGACGGTGAAATTAGGTGTAAGGCTTCGTTTAGAAAGTCGCGGGAATTG
AATAAGTTGTTGAGAGACAACTAG

Upstream 100 bases:

>100_bases
CCAGGGCAATGAATCGTAGTATCTTGTTTTGAGATAGACTGCTTTTCATGGTAAGAGCAAGCAAACAATTATATTTTTGA
CAATTTTGGAGGAAGAATGA

Downstream 100 bases:

>100_bases
TTTTTTAATATTATTTAGAGCTTCTGTCAGTGTTATTTGACAGGGCTCTTTTGTTATGAATATGAAATCTGATTATATAA
TATAGGCGCTGAAGATAGTT

Product: response regulator PlnD, repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MFPIYLYEDNAEQRDNYCKTVNNTIMINEFAMELRVATDDQKIILADLNQQQDGLFFLDMEIGEDKQTGLELASRIRATI
PLAKIVFITTHDELSFVTLERRIAPLDYILKDQSADLITQRIIKDINVVQNELKKTNSQRKDVFNYKLGTRYFSLALDDV
ILLSTSKLRPGSVQLHAINKVAEFPGNLNALEEKYPQFFRCDKSSLVNLNHLRSFDYKEKELLLDGEIRCKASFRKSREL
NKLLRDN

Sequences:

>Translated_247_residues
MFPIYLYEDNAEQRDNYCKTVNNTIMINEFAMELRVATDDQKIILADLNQQQDGLFFLDMEIGEDKQTGLELASRIRATI
PLAKIVFITTHDELSFVTLERRIAPLDYILKDQSADLITQRIIKDINVVQNELKKTNSQRKDVFNYKLGTRYFSLALDDV
ILLSTSKLRPGSVQLHAINKVAEFPGNLNALEEKYPQFFRCDKSSLVNLNHLRSFDYKEKELLLDGEIRCKASFRKSREL
NKLLRDN
>Mature_247_residues
MFPIYLYEDNAEQRDNYCKTVNNTIMINEFAMELRVATDDQKIILADLNQQQDGLFFLDMEIGEDKQTGLELASRIRATI
PLAKIVFITTHDELSFVTLERRIAPLDYILKDQSADLITQRIIKDINVVQNELKKTNSQRKDVFNYKLGTRYFSLALDDV
ILLSTSKLRPGSVQLHAINKVAEFPGNLNALEEKYPQFFRCDKSSLVNLNHLRSFDYKEKELLLDGEIRCKASFRKSREL
NKLLRDN

Specific function: Required for high-level post-exponential phase expression of a series of secreted proteins [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28688; Mature: 28688

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPIYLYEDNAEQRDNYCKTVNNTIMINEFAMELRVATDDQKIILADLNQQQDGLFFLDM
CCEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEE
EIGEDKQTGLELASRIRATIPLAKIVFITTHDELSFVTLERRIAPLDYILKDQSADLITQ
EECCCHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEHHHHCCCHHHHHCCCCHHHHHH
RIIKDINVVQNELKKTNSQRKDVFNYKLGTRYFSLALDDVILLSTSKLRPGSVQLHAINK
HHHHHHHHHHHHHHHCCCHHHHHHEEECCCCHHHHHHHCEEEEECCCCCCCCEEEEEEHH
VAEFPGNLNALEEKYPQFFRCDKSSLVNLNHLRSFDYKEKELLLDGEIRCKASFRKSREL
HHHCCCCCCHHHHHCHHHHCCCCHHCCCHHHHHCCCCCCCEEEECCCEEEEHHHHHHHHH
NKLLRDN
HHHHCCC
>Mature Secondary Structure
MFPIYLYEDNAEQRDNYCKTVNNTIMINEFAMELRVATDDQKIILADLNQQQDGLFFLDM
CCEEEEECCCCHHHHHHHHHCCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEEE
EIGEDKQTGLELASRIRATIPLAKIVFITTHDELSFVTLERRIAPLDYILKDQSADLITQ
EECCCHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEHHHHCCCHHHHHCCCCHHHHHH
RIIKDINVVQNELKKTNSQRKDVFNYKLGTRYFSLALDDVILLSTSKLRPGSVQLHAINK
HHHHHHHHHHHHHHHCCCHHHHHHEEECCCCHHHHHHHCEEEEECCCCCCCCEEEEEEHH
VAEFPGNLNALEEKYPQFFRCDKSSLVNLNHLRSFDYKEKELLLDGEIRCKASFRKSREL
HHHCCCCCCHHHHHCHHHHCCCCHHCCCHHHHHCCCCCCCEEEECCCEEEEHHHHHHHHH
NKLLRDN
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA