| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is 28377220
Identifier: 28377220
GI number: 28377220
Start: 271879
End: 273936
Strand: Direct
Name: 28377220
Synonym: lp_0297
Alternate gene names: NA
Gene position: 271879-273936 (Clockwise)
Preceding gene: 28377219
Following gene: 28377221
Centisome position: 8.22
GC content: 48.25
Gene sequence:
>2058_bases GTGAAAGAAGTAAGGTTTTGGGGACTCTTGTTAGGACTGTTTGTCTGTTTAGGGGCAGTGATACCGTTAGTTAGTAAGGC TGACGTACTTGATACGGCACCCGCTGGACTGAATCTGGAAGGCTTATTTGAACCGGGAAAGTTTGACCGTAATTCGGCCA CAATGCAGACTGTTTTAAAGAATGGCCATTCGCAGCATGTTATCGAATTAACAAATGACGATAATCAAGTTGGGGCAATG TGGTCAACCCCTGTTAATCGCTTTAACATGCGGGTCGATAACCAAGTCTCAATGTGGGTGAACTTTGGGGACAAAGCCGT GAGTGAAGGACTGGCCGTTGTTTTACAGAATGATCCCCACAAAATGAGTGCGATTAGTCGGTATGGAAAGAAAAGCATTA TTGGTGAGAACTTGGGTGTTTATGGGACGGATACCTATACACGGCGAACGGCGCCGGCCACGATTGCTAAGACGGCGATT CAAAAAAGTTGGGCGTTGGAGCTGGATACCAAAGTGAATGACGGTGGTTTTTGGGGATTGTATCCCCGGGGGAATTCTTT CGATGAAAAGCCTAAAAAAATGCATATGGCCGCGAGCTACCCTGCAAGTCCGGATACTTATACGCAACGGGGTGGTTTAA CGTCCTCTTATCGTTTTGAACAGAACCATGGGAGTATCGCTGATAAATTACCACTCGCGGACGGTAACTGGCACCATCTT GTATTGAAGTGGGTCGCCAGTAAACAAATCATGAGTTATACCCTGGATCAGGGACCAACACGAATGACCACAATTGATAC AACAGTCTTTGGAAAGGATATCCGGAATGTTACTTGGGGATTAACTAGTACGGCGACAACCGCTAATGCCAGAACACTGG TCGTCTTTGACCGGTTGCCACAACCGATTGAAATCGAGTCAGATTTAAACGTAACCAATCTGACTCAAGAGCGAACTGTC CATGAAGGAGACTGGGTTCATGGTGGGGATGAGTTGGAATATGAGTACGTTCTGAGCTATCTCAATGGTGACAATGAATG GCAACAGGTTAAGGCCAGCCTACCATTACCCGAACAAGTTCACTTTAGTCACGCGAAGATCCGCTATGCGGATGGTACCG ATGAAGAGATCAATTTACCAGCGGACGATAACGAATCGTCGGTGGCCCGCTTACAACACGATTTGCAGCGGACACTATCA ATGAAAAATCCGCACGCTTATATTACGCTGATTGGTGAGGCTGCCAAGGTCGATCGGGATACTTTTGTTGATGATGACAT GAGTTACTTTGAGGGTCACGAGATGAAGACCGCAACGGCCACACCGCACTTCACCATTACGACCAATAAGACCGTTAACC TGACGATTGAACCGTTGACACAAGTGAAGAAAGGCGAGCCCGTCATCATTAAGGGCCAAATTAAGCTAAATGATGGGTTA GACTTTGACAATGATGGCATGCGTATCGAGTACCGGGTCAATGGTGAAGCGGGAGAAGACTATCAGTTGAGCATGGACGA TCCGGTTGGTTATGTCGAATTTGAAGTGGATGCCGAAGAACTACAAATCGGTGAAAATCAGATTACGTTACGGGCTCATA GCAAAGATAACGCCTACTCAGAACCAGTGACAGTAACGGTCACGGTCATTGGTGGGGAGTTACAGCTGAAAAAAGTCAGT ACTGAAAGTGTGTTTGCACCAATCAAGTTGACGGGAACGGCTCAAGTCAGTCGGCCCGAGGGACTTGAAGTAGTTGTCAA TGATGATACGGGCTCGAAAGCCGCTTGGCGCTTAGAGGCGACCGCGACCCCTCTCGTGACTAATCAGGGCCGCACACTAG CGGGAAACTTGTATTATCAGGATGGTGCCAAGCTGACAATGTTGGGAAAGGATGCCGTGGAAATCGCGCGCCAAAAGACG GCCCCGGGGATCGACTATGACGTGACCGCCCACTGGTCATCGCAACAAGGTTTGGTGCTCAAAACAACGCCCGCCGCTGT TCCTGGAAGTTATCAGGGTACGATCACGTGGCACTTAAGTACCGTACCGGAAGAGTGA
Upstream 100 bases:
>100_bases ACTTATTATAACCATAAAAATAATTGACATGATGTCGCTTAATTTGCTAAGATACGGCGTAAGAATAGCTGCGGAAGGCA AGTGATGGGAGCGACGTTAG
Downstream 100 bases:
>100_bases GTTTACGATTGTGTAAGTAACTCATTTAATCAATAAGTTCAGTAGTCGCGACAAGAATTAATTGTTAATTCTTGTCGCGA CTATTTGGCGTTCAGCGAAA
Product: extracellular protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 685; Mature: 685
Protein sequence:
>685_residues MKEVRFWGLLLGLFVCLGAVIPLVSKADVLDTAPAGLNLEGLFEPGKFDRNSATMQTVLKNGHSQHVIELTNDDNQVGAM WSTPVNRFNMRVDNQVSMWVNFGDKAVSEGLAVVLQNDPHKMSAISRYGKKSIIGENLGVYGTDTYTRRTAPATIAKTAI QKSWALELDTKVNDGGFWGLYPRGNSFDEKPKKMHMAASYPASPDTYTQRGGLTSSYRFEQNHGSIADKLPLADGNWHHL VLKWVASKQIMSYTLDQGPTRMTTIDTTVFGKDIRNVTWGLTSTATTANARTLVVFDRLPQPIEIESDLNVTNLTQERTV HEGDWVHGGDELEYEYVLSYLNGDNEWQQVKASLPLPEQVHFSHAKIRYADGTDEEINLPADDNESSVARLQHDLQRTLS MKNPHAYITLIGEAAKVDRDTFVDDDMSYFEGHEMKTATATPHFTITTNKTVNLTIEPLTQVKKGEPVIIKGQIKLNDGL DFDNDGMRIEYRVNGEAGEDYQLSMDDPVGYVEFEVDAEELQIGENQITLRAHSKDNAYSEPVTVTVTVIGGELQLKKVS TESVFAPIKLTGTAQVSRPEGLEVVVNDDTGSKAAWRLEATATPLVTNQGRTLAGNLYYQDGAKLTMLGKDAVEIARQKT APGIDYDVTAHWSSQQGLVLKTTPAAVPGSYQGTITWHLSTVPEE
Sequences:
>Translated_685_residues MKEVRFWGLLLGLFVCLGAVIPLVSKADVLDTAPAGLNLEGLFEPGKFDRNSATMQTVLKNGHSQHVIELTNDDNQVGAM WSTPVNRFNMRVDNQVSMWVNFGDKAVSEGLAVVLQNDPHKMSAISRYGKKSIIGENLGVYGTDTYTRRTAPATIAKTAI QKSWALELDTKVNDGGFWGLYPRGNSFDEKPKKMHMAASYPASPDTYTQRGGLTSSYRFEQNHGSIADKLPLADGNWHHL VLKWVASKQIMSYTLDQGPTRMTTIDTTVFGKDIRNVTWGLTSTATTANARTLVVFDRLPQPIEIESDLNVTNLTQERTV HEGDWVHGGDELEYEYVLSYLNGDNEWQQVKASLPLPEQVHFSHAKIRYADGTDEEINLPADDNESSVARLQHDLQRTLS MKNPHAYITLIGEAAKVDRDTFVDDDMSYFEGHEMKTATATPHFTITTNKTVNLTIEPLTQVKKGEPVIIKGQIKLNDGL DFDNDGMRIEYRVNGEAGEDYQLSMDDPVGYVEFEVDAEELQIGENQITLRAHSKDNAYSEPVTVTVTVIGGELQLKKVS TESVFAPIKLTGTAQVSRPEGLEVVVNDDTGSKAAWRLEATATPLVTNQGRTLAGNLYYQDGAKLTMLGKDAVEIARQKT APGIDYDVTAHWSSQQGLVLKTTPAAVPGSYQGTITWHLSTVPEE >Mature_685_residues MKEVRFWGLLLGLFVCLGAVIPLVSKADVLDTAPAGLNLEGLFEPGKFDRNSATMQTVLKNGHSQHVIELTNDDNQVGAM WSTPVNRFNMRVDNQVSMWVNFGDKAVSEGLAVVLQNDPHKMSAISRYGKKSIIGENLGVYGTDTYTRRTAPATIAKTAI QKSWALELDTKVNDGGFWGLYPRGNSFDEKPKKMHMAASYPASPDTYTQRGGLTSSYRFEQNHGSIADKLPLADGNWHHL VLKWVASKQIMSYTLDQGPTRMTTIDTTVFGKDIRNVTWGLTSTATTANARTLVVFDRLPQPIEIESDLNVTNLTQERTV HEGDWVHGGDELEYEYVLSYLNGDNEWQQVKASLPLPEQVHFSHAKIRYADGTDEEINLPADDNESSVARLQHDLQRTLS MKNPHAYITLIGEAAKVDRDTFVDDDMSYFEGHEMKTATATPHFTITTNKTVNLTIEPLTQVKKGEPVIIKGQIKLNDGL DFDNDGMRIEYRVNGEAGEDYQLSMDDPVGYVEFEVDAEELQIGENQITLRAHSKDNAYSEPVTVTVTVIGGELQLKKVS TESVFAPIKLTGTAQVSRPEGLEVVVNDDTGSKAAWRLEATATPLVTNQGRTLAGNLYYQDGAKLTMLGKDAVEIARQKT APGIDYDVTAHWSSQQGLVLKTTPAAVPGSYQGTITWHLSTVPEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75717; Mature: 75717
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEVRFWGLLLGLFVCLGAVIPLVSKADVLDTAPAGLNLEGLFEPGKFDRNSATMQTVLK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHH NGHSQHVIELTNDDNQVGAMWSTPVNRFNMRVDNQVSMWVNFGDKAVSEGLAVVLQNDPH CCCCCEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEEEECCHHHHCCCEEEEEECCCH KMSAISRYGKKSIIGENLGVYGTDTYTRRTAPATIAKTAIQKSWALELDTKVNDGGFWGL HHHHHHHCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCEEEEEECEECCCCEEEE YPRGNSFDEKPKKMHMAASYPASPDTYTQRGGLTSSYRFEQNHGSIADKLPLADGNWHHL CCCCCCCCCCCHHEEEEECCCCCCCCCHHCCCCCCCEEEECCCCCCHHCCCCCCCCEEEE VLKWVASKQIMSYTLDQGPTRMTTIDTTVFGKDIRNVTWGLTSTATTANARTLVVFDRLP EEEEHHHHHHHHEECCCCCCEEEEEEEEECCCCHHHEEECCCCCCCCCCCEEEEEEECCC QPIEIESDLNVTNLTQERTVHEGDWVHGGDELEYEYVLSYLNGDNEWQQVKASLPLPEQV CCEEECCCCCEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHEECCCCCHHC HFSHAKIRYADGTDEEINLPADDNESSVARLQHDLQRTLSMKNPHAYITLIGEAAKVDRD CCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCC TFVDDDMSYFEGHEMKTATATPHFTITTNKTVNLTIEPLTQVKKGEPVIIKGQIKLNDGL CCCCCCHHHHCCCCEEEEECCCEEEEEECCEEEEEECCHHHHCCCCCEEEEEEEEECCCC DFDNDGMRIEYRVNGEAGEDYQLSMDDPVGYVEFEVDAEELQIGENQITLRAHSKDNAYS CCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECHHHHCCCCCEEEEEEECCCCCCC EPVTVTVTVIGGELQLKKVSTESVFAPIKLTGTAQVSRPEGLEVVVNDDTGSKAAWRLEA CCEEEEEEEECCEEEEEEECCCCEEEEEEEECCEECCCCCCCEEEEECCCCCCEEEEEEC TATPLVTNQGRTLAGNLYYQDGAKLTMLGKDAVEIARQKTAPGIDYDVTAHWSSQQGLVL CCCCEEECCCCEEEEEEEEECCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCCEEE KTTPAAVPGSYQGTITWHLSTVPEE EECCCCCCCCCCEEEEEEEECCCCC >Mature Secondary Structure MKEVRFWGLLLGLFVCLGAVIPLVSKADVLDTAPAGLNLEGLFEPGKFDRNSATMQTVLK CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHH NGHSQHVIELTNDDNQVGAMWSTPVNRFNMRVDNQVSMWVNFGDKAVSEGLAVVLQNDPH CCCCCEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEEEECCHHHHCCCEEEEEECCCH KMSAISRYGKKSIIGENLGVYGTDTYTRRTAPATIAKTAIQKSWALELDTKVNDGGFWGL HHHHHHHCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCEEEEEECEECCCCEEEE YPRGNSFDEKPKKMHMAASYPASPDTYTQRGGLTSSYRFEQNHGSIADKLPLADGNWHHL CCCCCCCCCCCHHEEEEECCCCCCCCCHHCCCCCCCEEEECCCCCCHHCCCCCCCCEEEE VLKWVASKQIMSYTLDQGPTRMTTIDTTVFGKDIRNVTWGLTSTATTANARTLVVFDRLP EEEEHHHHHHHHEECCCCCCEEEEEEEEECCCCHHHEEECCCCCCCCCCCEEEEEEECCC QPIEIESDLNVTNLTQERTVHEGDWVHGGDELEYEYVLSYLNGDNEWQQVKASLPLPEQV CCEEECCCCCEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHEECCCCCHHC HFSHAKIRYADGTDEEINLPADDNESSVARLQHDLQRTLSMKNPHAYITLIGEAAKVDRD CCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCC TFVDDDMSYFEGHEMKTATATPHFTITTNKTVNLTIEPLTQVKKGEPVIIKGQIKLNDGL CCCCCCHHHHCCCCEEEEECCCEEEEEECCEEEEEECCHHHHCCCCCEEEEEEEEECCCC DFDNDGMRIEYRVNGEAGEDYQLSMDDPVGYVEFEVDAEELQIGENQITLRAHSKDNAYS CCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECHHHHCCCCCEEEEEEECCCCCCC EPVTVTVTVIGGELQLKKVSTESVFAPIKLTGTAQVSRPEGLEVVVNDDTGSKAAWRLEA CCEEEEEEEECCEEEEEEECCCCEEEEEEEECCEECCCCCCCEEEEECCCCCCEEEEEEC TATPLVTNQGRTLAGNLYYQDGAKLTMLGKDAVEIARQKTAPGIDYDVTAHWSSQQGLVL CCCCEEECCCCEEEEEEEEECCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCCCEEE KTTPAAVPGSYQGTITWHLSTVPEE EECCCCCCCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA