BacMap

Definition	Clostridium tetani E88 chromosome, complete genome.
Accession	NC_004557
Length	2,799,251

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The map label for this gene is oppD [H]

Identifier: 28211081

GI number: 28211081

Start: 1515429

End: 1516370

Strand: Direct

Name: oppD [H]

Synonym: CTC01403

Alternate gene names: 28211081

Gene position: 1515429-1516370 (Clockwise)

Preceding gene: 28211080

Following gene: 28211082

Centisome position: 54.14

GC content: 29.72

Gene sequence:

>942_bases
ATGAATATGGATATAGAAATAAAAAATTTAAAAGTAGAATTTCCTACTAAAGAAGGAAATGTACGGGCTGTAGATAATAT
CTCTCTTAAAATAAATATGGGAAAAGTATTAGGTCTCATTGGTGAGACAGGTAGTGGAAAGTCTGTACTAGGATTATCTA
TATTAGGTTTATTATCTAATAGTGCAATTATTTCTGGGGAAATATTGTATAAAAACACCAACTTATTATCATTAAATATA
AATGATATGAGAAATTTAAGAGGAGTTGATATTGCATTAATTCCTCAAAATCCTAGTACCGCTTTAAACCCAATAATGAA
GGTTGGAAAACAAATATGTGAAGGAGAAAATAATAATAAAAAGGATTGTAAAATTAAAGTAGTTAATTTGTTAAAAGAAT
TATTTCTCTCTAATCCTTCAAAGGTTGCAGACTCTTACCCATTTGAACTTAGCGGTGGTATGAAACAAAGAGCTTTGGCT
TCTATGGGTATATATTGTAATCCCAATTGGATTATTGCAGATGAACCTACAAAAGGACTTGATGCTATAGTTCGAGGTCA
AGTCTATGAAACTTTACATAAAATAACTAATAGTCGTAATTGTGGCATGCTTTTAATTACTCATGATTTAATGCTTTCTA
AGAATTTATGCGATAATATAGCAGTTATGTATGGCGGTGACATAGTTGAAATTGGAAAAGCTTATGATGTTTTAGAAAAC
TCTAAGCATCCTTATACAAAGGGACTTGTATTTTCACAACCTCATAAAGGATTACAACCTATGAAGGGTTCTTCTCCTAG
TCTTATTAACCCTCCTATAGGTTGTAAGTTTTCTCAAAGATGTTCTAATAAAATACCTATTTGTTCATTAAAAAAACCTG
ATTTTTATACACTAGAAAATGGCTCTAAAGTGAGGTGTTTTTTGTTTGATAAAAGTAAATAA

Upstream 100 bases:

>100_bases
CTTTTAAGTTTAAGCATTAATATAATTGGAGATTTTATAAGAGATTACTTGGACAAAGGAAAAGATATTTATAATCAATA
TATATAAATGAGGTAATTTT

Downstream 100 bases:

>100_bases
CCTAACTAAAAGCTTTAGCAGAAATGGTTTTATAAAGAATAAGTCCTTAGTTTTAGATAATGTATCTTTACATATAAAAA
AAGGAATTACTCTTGGCCTC

Product: oligopeptide transport ATP-binding protein oppD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI
NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA
SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN
SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK

Sequences:

>Translated_313_residues
MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI
NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA
SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN
SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK
>Mature_313_residues
MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI
NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA
SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN
SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=297, Percent_Identity=23.9057239057239, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI153792144, Length=194, Percent_Identity=30.4123711340206, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27436953, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI27477115, Length=287, Percent_Identity=22.9965156794425, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787759, Length=288, Percent_Identity=37.1527777777778, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1789963, Length=312, Percent_Identity=35.5769230769231, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI48994883, Length=312, Percent_Identity=34.6153846153846, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=32.2222222222222, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787500, Length=312, Percent_Identity=33.0128205128205, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1788506, Length=272, Percent_Identity=34.5588235294118, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787548, Length=295, Percent_Identity=30.1694915254237, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1789962, Length=323, Percent_Identity=31.5789473684211, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1789890, Length=269, Percent_Identity=33.457249070632, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787758, Length=319, Percent_Identity=27.5862068965517, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=31.4893617021277, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=29.1666666666667, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786398, Length=253, Percent_Identity=29.2490118577075, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788761, Length=233, Percent_Identity=31.3304721030043, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=29.8642533936652, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=26.4069264069264, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=29.4871794871795, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.9414225941423, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=274, Percent_Identity=25.5474452554745, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=27.9475982532751, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787712, Length=255, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=25.5506607929515, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787029, Length=248, Percent_Identity=28.6290322580645, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=236, Percent_Identity=25.8474576271186, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=25.1101321585903, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786345, Length=251, Percent_Identity=26.6932270916335, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082267, Length=251, Percent_Identity=27.0916334661355, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787143, Length=257, Percent_Identity=28.0155642023346, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=26.2008733624454, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=27.2340425531915, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=24.4444444444444, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=24.7899159663866, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081782, Length=239, Percent_Identity=23.8493723849372, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=22.9166666666667, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=274, Percent_Identity=27.7372262773723, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193202349, Length=248, Percent_Identity=29.4354838709677, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=28.4552845528455, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17543740, Length=252, Percent_Identity=28.1746031746032, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=211, Percent_Identity=30.3317535545024, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17569081, Length=245, Percent_Identity=28.1632653061224, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=27.7310924369748, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=244, Percent_Identity=25.8196721311475, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85726357, Length=256, Percent_Identity=26.5625, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24641565, Length=270, Percent_Identity=26.2962962962963, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 34363; Mature: 34363

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00589 PTS_HPR_SER ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSN
CCCCEEEEEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHCC
SAIISGEILYKNTNLLSLNINDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNK
CEEEEEEEEEECCCEEEEEHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
KDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALASMGIYCNPNWIIADEPTKGL
CCHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCHHHHHHHHCCEEECCCEEEECCCCCCH
DAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCEEEEECCCEEECCHHHHHHHC
SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLEN
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEEECC
GSKVRCFLFDKSK
CCEEEEEEEECCC
>Mature Secondary Structure
MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSN
CCCCEEEEEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHCC
SAIISGEILYKNTNLLSLNINDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNK
CEEEEEEEEEECCCEEEEEHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC
KDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALASMGIYCNPNWIIADEPTKGL
CCHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCHHHHHHHHCCEEECCCEEEECCCCCCH
DAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN
HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCEEEEECCCEEECCHHHHHHHC
SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLEN
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEEECC
GSKVRCFLFDKSK
CCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]