| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is yesS [H]
Identifier: 28211041
GI number: 28211041
Start: 1462762
End: 1464843
Strand: Direct
Name: yesS [H]
Synonym: CTC01361
Alternate gene names: 28211041
Gene position: 1462762-1464843 (Clockwise)
Preceding gene: 28211038
Following gene: 28211042
Centisome position: 52.26
GC content: 25.5
Gene sequence:
>2082_bases GTGATGAGAAAAGAGTACATAACTTTTCCTCAAGATATGCCTATAAAAATATCCTTTGCAAGTATAAAAGAATATCCCTT TCATTGGCATAATTCTATTCAAATTATTTTTGTATTAGAAGGCACCATTAAAGTTACTATTGAATCAGGGACCTATGAAC TTGTTAAAAATGATTTAGAAATTATTAATGTAGATGAAACTCACAGAATTTTTAGTACTGATAAAAATAATAAAGTTTTA ATTTTTTATTTTGATGTATCTTTTTTTGAAAAGTACTATAATGACATGGAAAATATATTTTTTTATACCAATACCTCTGA TGATGGAGCACAAAATACTGTAGAGTATGATGAGCTTAGAACAATGCTCTCTATATTACTTTGTGAGTTTGTTCAAAAAC AAGTTGATTATGATAAGGAAATTGAATCTACTTTAGTAGATTTACTTTACCACTTAATAAATAATTTTCATTATCTTATG TATGAGCAAGAGGATTTTAGAGAAAATAAAGATCAGCTTGGAAGATATCATAGAATAGCAAAATATATTTATAATAATTA TAATAATAAAATTAGCCTTCAAGATATAGCAGATAAAGAGTTTCTAAGTACTCATTATCTTTCCCATGAAATAAAATATG CCCTGGGATATAGTTTTACAGACCTTCTAAACTTAACCCGTGTGGAAGAATCCGTTAAACTTTTATTAAATACAGATAAG ACAATTTCTGAAATATCCGAAGATGTGGGCTTTTCCCACACCAGATATTATAACAAACATTTTAAAATTCATTATAAGAT TTCTCCAAGTCAATTTAGAAAAAAGTATAAAGTTGATGAAGAAACTTTTCAAAATCAAAAGAAACTTACTTTCTTTGAAT TAAAAGATAGTTTAGACTATATATATGCTTACCTTCAAAATTACGACAGATATAATTTTGAAAATAAAATTGTAAAAGTC CGCATTGATGTTGATGATGAAATAGATGAATTTGATAACTCCTTTAAAGATGTAATTAATATAGGGGATGCCTTTGACCT TCTTTTAGAAGACAATAAAGATATTCTAGAAGAAATTCAAGAAGAAATTTCCTTTAAATATGGTAGAATATTCAATCTCT TCTCCTCTGATATGGGGATATTTCCTTCCTGTAAATTTTTTAATTGGAATAGAGCTAAATCTGTTTTAGAATACATGGAA TCTATAAATTTAAAACCTCTCATATTAATAGATTCTAATAATTTTTCTGAAGATGAATTCATGAGGATTTTACAAAGTTT TATAAATTATTTTGTAGATATAGAAGGAATTGATATATATAATTTAAGATTTCAATTTAGTTCACATATAGAAAAAGAAT TAATTAATAAAATTAGCAATTTACTAAATTCTTACGAATTAGATATTTGTGATGAAGTGTTTTTTGATTCCTTAGATATA AATTTAATTTATGATACGGCTTATATGATACCTTATATAATAAATAAAACCATTCAAAAGAATAAAAATTGGAATAATTT AAGAGCTTTTGATGCTCTAGATAGACAGGTTAATCTTACAAATGAAGTCTTCTTTGGATATCCTGGAATTGTAAATGACA TGGGCATTAAAAAACCTTCTTATTATGCTTATTATCTGTTAAATAAATTAGGCGACACTATGGTCTGCAAAGATGATGGG TACATTGTTACGAAAACTGAAGATGAATATCAAATACTTTTATATAGTTATAATGAAGATTTAGATAAACTTATTAAATT TGAAGACTTCTATAAATTAAGAGGTTTTAAAAATACTATTAAGCAAAAACTTTCTATTAACATACTAAATATTCCTACAG ATACTAGAATGACTGTATATGAAGTAAATGAAAAAATAGGTTCTTCCTATAGTTACTGGAAGGGTATGGGAAGTCCAATA AGGCTTAATAAAGAAGAAAAAGAAATCCTTCATAAGGCTTCCTTTCCTAAAATACATTTTAGATATGCTAAAAAAAGTAC TGTTTTAAATATAATTTCTGAACTACAAAGCTATGGAGCTACTTTAATTTTAATTAAGAAAATATCAAAGCACCTTAAAT AA
Upstream 100 bases:
>100_bases TTTTTCGTAATGTTAATGAAGAAAAAATGTCTACAATTGTTCATTGTTCATTATTCATTATTCATTAAATAAGTTGTTCA TTAAATAAGCCGGAGGTGAT
Downstream 100 bases:
>100_bases GGTGTTTTTCTGTTTTTTGTAAGCTTATGTAAATTTTAAATTATCCCACATTAGTACCTTTATCTCAGCACTTAAGGGAA TGCAATGGCTCATACATATA
Product: transcriptional regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 693; Mature: 693
Protein sequence:
>693_residues MMRKEYITFPQDMPIKISFASIKEYPFHWHNSIQIIFVLEGTIKVTIESGTYELVKNDLEIINVDETHRIFSTDKNNKVL IFYFDVSFFEKYYNDMENIFFYTNTSDDGAQNTVEYDELRTMLSILLCEFVQKQVDYDKEIESTLVDLLYHLINNFHYLM YEQEDFRENKDQLGRYHRIAKYIYNNYNNKISLQDIADKEFLSTHYLSHEIKYALGYSFTDLLNLTRVEESVKLLLNTDK TISEISEDVGFSHTRYYNKHFKIHYKISPSQFRKKYKVDEETFQNQKKLTFFELKDSLDYIYAYLQNYDRYNFENKIVKV RIDVDDEIDEFDNSFKDVINIGDAFDLLLEDNKDILEEIQEEISFKYGRIFNLFSSDMGIFPSCKFFNWNRAKSVLEYME SINLKPLILIDSNNFSEDEFMRILQSFINYFVDIEGIDIYNLRFQFSSHIEKELINKISNLLNSYELDICDEVFFDSLDI NLIYDTAYMIPYIINKTIQKNKNWNNLRAFDALDRQVNLTNEVFFGYPGIVNDMGIKKPSYYAYYLLNKLGDTMVCKDDG YIVTKTEDEYQILLYSYNEDLDKLIKFEDFYKLRGFKNTIKQKLSINILNIPTDTRMTVYEVNEKIGSSYSYWKGMGSPI RLNKEEKEILHKASFPKIHFRYAKKSTVLNIISELQSYGATLILIKKISKHLK
Sequences:
>Translated_693_residues MMRKEYITFPQDMPIKISFASIKEYPFHWHNSIQIIFVLEGTIKVTIESGTYELVKNDLEIINVDETHRIFSTDKNNKVL IFYFDVSFFEKYYNDMENIFFYTNTSDDGAQNTVEYDELRTMLSILLCEFVQKQVDYDKEIESTLVDLLYHLINNFHYLM YEQEDFRENKDQLGRYHRIAKYIYNNYNNKISLQDIADKEFLSTHYLSHEIKYALGYSFTDLLNLTRVEESVKLLLNTDK TISEISEDVGFSHTRYYNKHFKIHYKISPSQFRKKYKVDEETFQNQKKLTFFELKDSLDYIYAYLQNYDRYNFENKIVKV RIDVDDEIDEFDNSFKDVINIGDAFDLLLEDNKDILEEIQEEISFKYGRIFNLFSSDMGIFPSCKFFNWNRAKSVLEYME SINLKPLILIDSNNFSEDEFMRILQSFINYFVDIEGIDIYNLRFQFSSHIEKELINKISNLLNSYELDICDEVFFDSLDI NLIYDTAYMIPYIINKTIQKNKNWNNLRAFDALDRQVNLTNEVFFGYPGIVNDMGIKKPSYYAYYLLNKLGDTMVCKDDG YIVTKTEDEYQILLYSYNEDLDKLIKFEDFYKLRGFKNTIKQKLSINILNIPTDTRMTVYEVNEKIGSSYSYWKGMGSPI RLNKEEKEILHKASFPKIHFRYAKKSTVLNIISELQSYGATLILIKKISKHLK >Mature_693_residues MMRKEYITFPQDMPIKISFASIKEYPFHWHNSIQIIFVLEGTIKVTIESGTYELVKNDLEIINVDETHRIFSTDKNNKVL IFYFDVSFFEKYYNDMENIFFYTNTSDDGAQNTVEYDELRTMLSILLCEFVQKQVDYDKEIESTLVDLLYHLINNFHYLM YEQEDFRENKDQLGRYHRIAKYIYNNYNNKISLQDIADKEFLSTHYLSHEIKYALGYSFTDLLNLTRVEESVKLLLNTDK TISEISEDVGFSHTRYYNKHFKIHYKISPSQFRKKYKVDEETFQNQKKLTFFELKDSLDYIYAYLQNYDRYNFENKIVKV RIDVDDEIDEFDNSFKDVINIGDAFDLLLEDNKDILEEIQEEISFKYGRIFNLFSSDMGIFPSCKFFNWNRAKSVLEYME SINLKPLILIDSNNFSEDEFMRILQSFINYFVDIEGIDIYNLRFQFSSHIEKELINKISNLLNSYELDICDEVFFDSLDI NLIYDTAYMIPYIINKTIQKNKNWNNLRAFDALDRQVNLTNEVFFGYPGIVNDMGIKKPSYYAYYLLNKLGDTMVCKDDG YIVTKTEDEYQILLYSYNEDLDKLIKFEDFYKLRGFKNTIKQKLSINILNIPTDTRMTVYEVNEKIGSSYSYWKGMGSPI RLNKEEKEILHKASFPKIHFRYAKKSTVLNIISELQSYGATLILIKKISKHLK
Specific function: Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization [H]
COG id: COG2207
COG function: function code K; AraC-type DNA-binding domain-containing proteins
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR018060 [H]
Pfam domain/function: PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 82685; Mature: 82685
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRKEYITFPQDMPIKISFASIKEYPFHWHNSIQIIFVLEGTIKVTIESGTYELVKNDLE CCCCCCCCCCCCCCEEEEEEHHHCCCCEECCCEEEEEEEECEEEEEEECCCHHHHHCCCE IINVDETHRIFSTDKNNKVLIFYFDVSFFEKYYNDMENIFFYTNTSDDGAQNTVEYDELR EEECCCCCCEEECCCCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH TMLSILLCEFVQKQVDYDKEIESTLVDLLYHLINNFHYLMYEQEDFRENKDQLGRYHRIA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHH KYIYNNYNNKISLQDIADKEFLSTHYLSHEIKYALGYSFTDLLNLTRVEESVKLLLNTDK HHHHHCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH TISEISEDVGFSHTRYYNKHFKIHYKISPSQFRKKYKVDEETFQNQKKLTFFELKDSLDY HHHHHHHHCCCCHHEEECCEEEEEEEECHHHHHHHHCCCHHHHCCCCCEEEEEHHHHHHH IYAYLQNYDRYNFENKIVKVRIDVDDEIDEFDNSFKDVINIGDAFDLLLEDNKDILEEIQ HHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHH EEISFKYGRIFNLFSSDMGIFPSCKFFNWNRAKSVLEYMESINLKPLILIDSNNFSEDEF HHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH MRILQSFINYFVDIEGIDIYNLRFQFSSHIEKELINKISNLLNSYELDICDEVFFDSLDI HHHHHHHHHHHEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCE NLIYDTAYMIPYIINKTIQKNKNWNNLRAFDALDRQVNLTNEVFFGYPGIVNDMGIKKPS EEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC YYAYYLLNKLGDTMVCKDDGYIVTKTEDEYQILLYSYNEDLDKLIKFEDFYKLRGFKNTI HHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHH KQKLSINILNIPTDTRMTVYEVNEKIGSSYSYWKGMGSPIRLNKEEKEILHKASFPKIHF HHHHEEEEEECCCCCCEEEEEEHHHHCCCCHHHHCCCCCEEECCHHHHHHHHCCCCEEEE RYAKKSTVLNIISELQSYGATLILIKKISKHLK EEHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCC >Mature Secondary Structure MMRKEYITFPQDMPIKISFASIKEYPFHWHNSIQIIFVLEGTIKVTIESGTYELVKNDLE CCCCCCCCCCCCCCEEEEEEHHHCCCCEECCCEEEEEEEECEEEEEEECCCHHHHHCCCE IINVDETHRIFSTDKNNKVLIFYFDVSFFEKYYNDMENIFFYTNTSDDGAQNTVEYDELR EEECCCCCCEEECCCCCEEEEEEECHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHH TMLSILLCEFVQKQVDYDKEIESTLVDLLYHLINNFHYLMYEQEDFRENKDQLGRYHRIA HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCHHHHHHHHHHH KYIYNNYNNKISLQDIADKEFLSTHYLSHEIKYALGYSFTDLLNLTRVEESVKLLLNTDK HHHHHCCCCEEEEHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH TISEISEDVGFSHTRYYNKHFKIHYKISPSQFRKKYKVDEETFQNQKKLTFFELKDSLDY HHHHHHHHCCCCHHEEECCEEEEEEEECHHHHHHHHCCCHHHHCCCCCEEEEEHHHHHHH IYAYLQNYDRYNFENKIVKVRIDVDDEIDEFDNSFKDVINIGDAFDLLLEDNKDILEEIQ HHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHH EEISFKYGRIFNLFSSDMGIFPSCKFFNWNRAKSVLEYMESINLKPLILIDSNNFSEDEF HHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH MRILQSFINYFVDIEGIDIYNLRFQFSSHIEKELINKISNLLNSYELDICDEVFFDSLDI HHHHHHHHHHHEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCE NLIYDTAYMIPYIINKTIQKNKNWNNLRAFDALDRQVNLTNEVFFGYPGIVNDMGIKKPS EEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCC YYAYYLLNKLGDTMVCKDDGYIVTKTEDEYQILLYSYNEDLDKLIKFEDFYKLRGFKNTI HHHHHHHHHCCCEEEEECCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHHHH KQKLSINILNIPTDTRMTVYEVNEKIGSSYSYWKGMGSPIRLNKEEKEILHKASFPKIHF HHHHEEEEEECCCCCCEEEEEEHHHHCCCCHHHHCCCCCEEECCHHHHHHHHCCCCEEEE RYAKKSTVLNIISELQSYGATLILIKKISKHLK EEHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]