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The map label for this gene is yggB [C]

Identifier: 28210181

GI number: 28210181

Start: 426570

End: 427448

Strand: Direct

Name: yggB [C]

Synonym: CTC00428

Alternate gene names: 28210181

Gene position: 426570-427448 (Clockwise)

Preceding gene: 28210180

Following gene: 28210182

Centisome position: 15.24

GC content: 23.78

Gene sequence:

>879_bases
ATGACTGATATTTTATTAAAGTTGACCTCAATGTTTAAGTCTATAAGTTTAAAATTTAAGTATGTAGGAACATTTCCTAA
ATTTCTAGTATCAATTATGCTTTTGATTATGTTTTATATTATTTATAGGTTTATATATAAATCTATAGAAAAAGCTAATC
TAAGCTCTGAAAAAACTATAAAATTAAAAAAACAAATATCTTTTATGAATAAGATTATTTTCTTGATTTTTCTAATTCCT
ATATGGGTATATGAATCTAGAGATATATTAACTTTCTTAGGATTATTTTCAGCAGGTATGGCATTTGCCTTTAAGGATTT
AGTGTCAAATTTCTTAGGATGGGTTATAATTAATTCTCATAAACCTTTTAAAATTGGAGATAGAATAAAAATAGGAAATA
ATATTGGTGATGTGGTAGAGATAGATTGGTTTTATACTACCATAATAGAAGTAACTGAAACTAATAAAATATATGGACAA
AGTACTGGGAGATTTGTTTATATACCAAATATAAAACTTATTACTACAGAAGTAATAAATGAAACAGGAGATTTTCCATT
TACTTGGAATGAAATAGAAATAAATATAACACTTAAAAGTAATTGGGAAAAGACTAAAGATATAATAAATAAAGTAGCAA
ATTCTGTATTAGGAGATATAGAAGGTGAGGTAAAAGAATCATTAGATATAGCCTGCAAAAAGCACCCTATATATTATCAA
AATTTATCACATACTATATATACTTCTATGATAGATGGAAAGATTATTTTAACATTAAGATTTATGTGTAAAATTAGAAG
CTTTAGAAATACAGAACATAAGATAATAGAAGGCATTTTAAGAGAAATAGGAAAAGAGAAAGATATAGAATTAATTTAA

Upstream 100 bases:

>100_bases
CTTTTAATAAAGATAATTTCATGGAAGATATACAATTTGATAAATTTATAATAGAAGAATTAGATAAAAAGGAAGAGTAG
ATAAGGGAGGACACTTTATA

Downstream 100 bases:

>100_bases
ATATATTTTATTAGAACAAAGGAGGAATACAATGTTTAAAGATGTAGTAGAGGAATTTAAAAAGTTTGCCATAAAAGGAA
ATGCAATTGATTTGGCAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTDILLKLTSMFKSISLKFKYVGTFPKFLVSIMLLIMFYIIYRFIYKSIEKANLSSEKTIKLKKQISFMNKIIFLIFLIP
IWVYESRDILTFLGLFSAGMAFAFKDLVSNFLGWVIINSHKPFKIGDRIKIGNNIGDVVEIDWFYTTIIEVTETNKIYGQ
STGRFVYIPNIKLITTEVINETGDFPFTWNEIEINITLKSNWEKTKDIINKVANSVLGDIEGEVKESLDIACKKHPIYYQ
NLSHTIYTSMIDGKIILTLRFMCKIRSFRNTEHKIIEGILREIGKEKDIELI

Sequences:

>Translated_292_residues
MTDILLKLTSMFKSISLKFKYVGTFPKFLVSIMLLIMFYIIYRFIYKSIEKANLSSEKTIKLKKQISFMNKIIFLIFLIP
IWVYESRDILTFLGLFSAGMAFAFKDLVSNFLGWVIINSHKPFKIGDRIKIGNNIGDVVEIDWFYTTIIEVTETNKIYGQ
STGRFVYIPNIKLITTEVINETGDFPFTWNEIEINITLKSNWEKTKDIINKVANSVLGDIEGEVKESLDIACKKHPIYYQ
NLSHTIYTSMIDGKIILTLRFMCKIRSFRNTEHKIIEGILREIGKEKDIELI
>Mature_291_residues
TDILLKLTSMFKSISLKFKYVGTFPKFLVSIMLLIMFYIIYRFIYKSIEKANLSSEKTIKLKKQISFMNKIIFLIFLIPI
WVYESRDILTFLGLFSAGMAFAFKDLVSNFLGWVIINSHKPFKIGDRIKIGNNIGDVVEIDWFYTTIIEVTETNKIYGQS
TGRFVYIPNIKLITTEVINETGDFPFTWNEIEINITLKSNWEKTKDIINKVANSVLGDIEGEVKESLDIACKKHPIYYQN
LSHTIYTSMIDGKIILTLRFMCKIRSFRNTEHKIIEGILREIGKEKDIELI

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33983; Mature: 33851

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDILLKLTSMFKSISLKFKYVGTFPKFLVSIMLLIMFYIIYRFIYKSIEKANLSSEKTI
CCHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KLKKQISFMNKIIFLIFLIPIWVYESRDILTFLGLFSAGMAFAFKDLVSNFLGWVIINSH
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC
KPFKIGDRIKIGNNIGDVVEIDWFYTTIIEVTETNKIYGQSTGRFVYIPNIKLITTEVIN
CCEECCCEEEECCCCCCEEEEHEEEEEEEEEECCCEEECCCCCCEEEECCEEEEEHHHHH
ETGDFPFTWNEIEINITLKSNWEKTKDIINKVANSVLGDIEGEVKESLDIACKKHPIYYQ
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC
NLSHTIYTSMIDGKIILTLRFMCKIRSFRNTEHKIIEGILREIGKEKDIELI
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TDILLKLTSMFKSISLKFKYVGTFPKFLVSIMLLIMFYIIYRFIYKSIEKANLSSEKTI
CHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
KLKKQISFMNKIIFLIFLIPIWVYESRDILTFLGLFSAGMAFAFKDLVSNFLGWVIINSH
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC
KPFKIGDRIKIGNNIGDVVEIDWFYTTIIEVTETNKIYGQSTGRFVYIPNIKLITTEVIN
CCEECCCEEEECCCCCCEEEEHEEEEEEEEEECCCEEECCCCCCEEEECCEEEEEHHHHH
ETGDFPFTWNEIEINITLKSNWEKTKDIINKVANSVLGDIEGEVKESLDIACKKHPIYYQ
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEC
NLSHTIYTSMIDGKIILTLRFMCKIRSFRNTEHKIIEGILREIGKEKDIELI
CCCHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]