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The map label for this gene is yhdW [H]

Identifier: 28210180

GI number: 28210180

Start: 424421

End: 426253

Strand: Direct

Name: yhdW [H]

Synonym: CTC00427

Alternate gene names: 28210180

Gene position: 424421-426253 (Clockwise)

Preceding gene: 28210179

Following gene: 28210181

Centisome position: 15.16

GC content: 23.62

Gene sequence:

>1833_bases
ATGAGAGAAAATGGAGCTTTTGCCCATATAATAAATATATTTAAGGATATAAAATATGGTTTTTTTAGATTAATAAAATA
TCAAATAGGTACGAAAATACTACTAAGTATAATAATATTACCTATATTTAATTTCTTGATAAATATACTAATACATAAGA
GCGATAGATTCCCTTTAGTAAATGGTGAAATAATAAAATTTGGACTTTCAAAAGAAGGAGCTATAACACTTTTTATGTTG
TTTATATTAGCTTATATTATAATACTAAGTGAAATAGGTGGATTAATAATAATAAGTAATCAATTATATTTAAGAAAAGA
AGAAAGTAGTTATGCAGATATTTTTAAATATTGCTTTAAAAGATTTTATAAAATATTTGGAGTGGGAAGTATCTTTATTT
TAATTCAATTTTTTTTATTTGTGCCATTACTAGATATAGGAATCAATAGTAGTTTCACATCCTTTGTGAAAATTCCAGAC
TTTATAGAGGATTACATATATAGTGATAATATTCTCATTGTATTTCAATATATATTAATGATGATAATGATATATTTTGC
TTTAAGGTGGATATTTTCTCTACACATTATAATATTAGAAAATAAGTCTGCAACAAAGGCTTTAAAAGAAAGTGGTCAAC
TGGTTAAAAGAAATCTTAAAGAATTTATAAAAAGATATGTAACATTTTCTATATTAAATGGTATTTTATATTTTATAATA
CTTGTATTATGGATGAGTTTAGTAGCAAATATATCTAAAAATATAAGTTATGGATCTTACTCAGGAAAATTTATTTTAGG
TGGTATAGTATTTTTTCATCAAATGGGAGCAGTGTTACTTTCTTTTATATACATACCTATACAGGTTCAATTTACTACAA
GAATGTATTATAAATTTGCATATATAAATGAAAATAAAACTATACCTAGTTTAAACCTTAAGATAAAAGAAAAAGATAGT
TTGCTAGATAAAATATTTAAAAATAAAAAAATGTTCATAGAGATATTCACAATTATATTTTTATTTTCAACTTTATTAAT
AGGAATGATTACAAGTGAAATAATTGAACAAAAATATACAGTAGAAGTAACTGCACATAGGGGAAATACTAAAGAAGCTC
CTGAAAATACTATTTCATCTGTAAAAAAGGCAATAGAGGCTAAATCAGACTATGCAGAAATAGATGTAAAAGAAACTAAA
GACGGAGAAATTATAGTATTTCATGATAATAACTTAAAAAGAATGGCAAAATTAAATAAAAATGTATGGGAAATGAATTA
TGAAGATATAAAAAATATAGATATAGGAATGCATTTTCATAAGAAGTTTAAAGGAGAGAAAATACCTCTCCTGCAAGAGG
TTATAGATGTATCCAAAGATAAAATAAAATTAAATATAGAGATAAAGGGAGATATTTACTCTAAAAATTTAGTGAAAAAA
GTAGTAAAAATAATAGAAGATAATGATATAATAAATAATTGTGTTGTAACTTCATTGGAATATAGCGATATAAAAAAGGT
AAAAGAACTAAATCCTAAAATAAAAACAGGATATATAATGTATATAGTAAAAGGAGATTTGACCAACATAAAGTCAGACT
TTTACAGTATGGAAGAATCTATAATAAGTAGTAATCTTGTAAATGAAATTCATGCTAATGGTAAAGAAATACACGTTTGG
ACAGTAAACCATAATTGGAAAATGGAAAGATTAATAAACATGGGAGTAGATAATATAATAACCGATGAAGTAGAAGCATT
AAGAGATACCTTAAAAATGAGAGAAGAAAGATCACCCTATGAAAAATTCATGGAAATTCTTACAAGTTATTAG

Upstream 100 bases:

>100_bases
TTTTCTTATTTTTTTCTTATAAAATAGATAAGAATATTTACAGTACATATAATGTAACCTATTATTATAAATGTGTATTA
TATAACAAGGGGGTGCATGT

Downstream 100 bases:

>100_bases
GGGGATAGAGTAGGAGGAACATTATGCCTAGAATATGGGGAAAGCTCATGAAAGATAATAGAATGGTTGACGAAGAAGTA
GTAGCTTATAATTCTGAAAA

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MRENGAFAHIINIFKDIKYGFFRLIKYQIGTKILLSIIILPIFNFLINILIHKSDRFPLVNGEIIKFGLSKEGAITLFML
FILAYIIILSEIGGLIIISNQLYLRKEESSYADIFKYCFKRFYKIFGVGSIFILIQFFLFVPLLDIGINSSFTSFVKIPD
FIEDYIYSDNILIVFQYILMMIMIYFALRWIFSLHIIILENKSATKALKESGQLVKRNLKEFIKRYVTFSILNGILYFII
LVLWMSLVANISKNISYGSYSGKFILGGIVFFHQMGAVLLSFIYIPIQVQFTTRMYYKFAYINENKTIPSLNLKIKEKDS
LLDKIFKNKKMFIEIFTIIFLFSTLLIGMITSEIIEQKYTVEVTAHRGNTKEAPENTISSVKKAIEAKSDYAEIDVKETK
DGEIIVFHDNNLKRMAKLNKNVWEMNYEDIKNIDIGMHFHKKFKGEKIPLLQEVIDVSKDKIKLNIEIKGDIYSKNLVKK
VVKIIEDNDIINNCVVTSLEYSDIKKVKELNPKIKTGYIMYIVKGDLTNIKSDFYSMEESIISSNLVNEIHANGKEIHVW
TVNHNWKMERLINMGVDNIITDEVEALRDTLKMREERSPYEKFMEILTSY

Sequences:

>Translated_610_residues
MRENGAFAHIINIFKDIKYGFFRLIKYQIGTKILLSIIILPIFNFLINILIHKSDRFPLVNGEIIKFGLSKEGAITLFML
FILAYIIILSEIGGLIIISNQLYLRKEESSYADIFKYCFKRFYKIFGVGSIFILIQFFLFVPLLDIGINSSFTSFVKIPD
FIEDYIYSDNILIVFQYILMMIMIYFALRWIFSLHIIILENKSATKALKESGQLVKRNLKEFIKRYVTFSILNGILYFII
LVLWMSLVANISKNISYGSYSGKFILGGIVFFHQMGAVLLSFIYIPIQVQFTTRMYYKFAYINENKTIPSLNLKIKEKDS
LLDKIFKNKKMFIEIFTIIFLFSTLLIGMITSEIIEQKYTVEVTAHRGNTKEAPENTISSVKKAIEAKSDYAEIDVKETK
DGEIIVFHDNNLKRMAKLNKNVWEMNYEDIKNIDIGMHFHKKFKGEKIPLLQEVIDVSKDKIKLNIEIKGDIYSKNLVKK
VVKIIEDNDIINNCVVTSLEYSDIKKVKELNPKIKTGYIMYIVKGDLTNIKSDFYSMEESIISSNLVNEIHANGKEIHVW
TVNHNWKMERLINMGVDNIITDEVEALRDTLKMREERSPYEKFMEILTSY
>Mature_610_residues
MRENGAFAHIINIFKDIKYGFFRLIKYQIGTKILLSIIILPIFNFLINILIHKSDRFPLVNGEIIKFGLSKEGAITLFML
FILAYIIILSEIGGLIIISNQLYLRKEESSYADIFKYCFKRFYKIFGVGSIFILIQFFLFVPLLDIGINSSFTSFVKIPD
FIEDYIYSDNILIVFQYILMMIMIYFALRWIFSLHIIILENKSATKALKESGQLVKRNLKEFIKRYVTFSILNGILYFII
LVLWMSLVANISKNISYGSYSGKFILGGIVFFHQMGAVLLSFIYIPIQVQFTTRMYYKFAYINENKTIPSLNLKIKEKDS
LLDKIFKNKKMFIEIFTIIFLFSTLLIGMITSEIIEQKYTVEVTAHRGNTKEAPENTISSVKKAIEAKSDYAEIDVKETK
DGEIIVFHDNNLKRMAKLNKNVWEMNYEDIKNIDIGMHFHKKFKGEKIPLLQEVIDVSKDKIKLNIEIKGDIYSKNLVKK
VVKIIEDNDIINNCVVTSLEYSDIKKVKELNPKIKTGYIMYIVKGDLTNIKSDFYSMEESIISSNLVNEIHANGKEIHVW
TVNHNWKMERLINMGVDNIITDEVEALRDTLKMREERSPYEKFMEILTSY

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=305, Percent_Identity=22.9508196721311, Blast_Score=80, Evalue=8e-15,
Organism=Homo sapiens, GI146198640, Length=274, Percent_Identity=22.2627737226277, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI7706617, Length=169, Percent_Identity=24.8520710059172, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI260763878, Length=164, Percent_Identity=28.6585365853659, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI260763880, Length=164, Percent_Identity=28.6585365853659, Blast_Score=70, Evalue=6e-12,
Organism=Escherichia coli, GI1789858, Length=230, Percent_Identity=28.2608695652174, Blast_Score=105, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17561436, Length=158, Percent_Identity=30.379746835443, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 71093; Mature: 71093

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRENGAFAHIINIFKDIKYGFFRLIKYQIGTKILLSIIILPIFNFLINILIHKSDRFPLV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NGEIIKFGLSKEGAITLFMLFILAYIIILSEIGGLIIISNQLYLRKEESSYADIFKYCFK
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCHHHHHHHHHH
RFYKIFGVGSIFILIQFFLFVPLLDIGINSSFTSFVKIPDFIEDYIYSDNILIVFQYILM
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHH
MIMIYFALRWIFSLHIIILENKSATKALKESGQLVKRNLKEFIKRYVTFSILNGILYFII
HHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLWMSLVANISKNISYGSYSGKFILGGIVFFHQMGAVLLSFIYIPIQVQFTTRMYYKFA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
YINENKTIPSLNLKIKEKDSLLDKIFKNKKMFIEIFTIIFLFSTLLIGMITSEIIEQKYT
EEECCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VEVTAHRGNTKEAPENTISSVKKAIEAKSDYAEIDVKETKDGEIIVFHDNNLKRMAKLNK
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHEEEEEECCCCCEEEEECCCHHHHHHHCC
NVWEMNYEDIKNIDIGMHFHKKFKGEKIPLLQEVIDVSKDKIKLNIEIKGDIYSKNLVKK
CHHCCCHHHHCCCEECHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH
VVKIIEDNDIINNCVVTSLEYSDIKKVKELNPKIKTGYIMYIVKGDLTNIKSDFYSMEES
HHHHHCCCCHHHHHHEECCCHHHHHHHHHCCCCEECCEEEEEEECCHHHHHHHHHHHHHH
IISSNLVNEIHANGKEIHVWTVNHNWKMERLINMGVDNIITDEVEALRDTLKMREERSPY
HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH
EKFMEILTSY
HHHHHHHHCC
>Mature Secondary Structure
MRENGAFAHIINIFKDIKYGFFRLIKYQIGTKILLSIIILPIFNFLINILIHKSDRFPLV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NGEIIKFGLSKEGAITLFMLFILAYIIILSEIGGLIIISNQLYLRKEESSYADIFKYCFK
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCHHHHHHHHHH
RFYKIFGVGSIFILIQFFLFVPLLDIGINSSFTSFVKIPDFIEDYIYSDNILIVFQYILM
HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHH
MIMIYFALRWIFSLHIIILENKSATKALKESGQLVKRNLKEFIKRYVTFSILNGILYFII
HHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLWMSLVANISKNISYGSYSGKFILGGIVFFHQMGAVLLSFIYIPIQVQFTTRMYYKFA
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
YINENKTIPSLNLKIKEKDSLLDKIFKNKKMFIEIFTIIFLFSTLLIGMITSEIIEQKYT
EEECCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VEVTAHRGNTKEAPENTISSVKKAIEAKSDYAEIDVKETKDGEIIVFHDNNLKRMAKLNK
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHEEEEEECCCCCEEEEECCCHHHHHHHCC
NVWEMNYEDIKNIDIGMHFHKKFKGEKIPLLQEVIDVSKDKIKLNIEIKGDIYSKNLVKK
CHHCCCHHHHCCCEECHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH
VVKIIEDNDIINNCVVTSLEYSDIKKVKELNPKIKTGYIMYIVKGDLTNIKSDFYSMEES
HHHHHCCCCHHHHHHEECCCHHHHHHHHHCCCCEECCEEEEEEECCHHHHHHHHHHHHHH
IISSNLVNEIHANGKEIHVWTVNHNWKMERLINMGVDNIITDEVEALRDTLKMREERSPY
HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH
EKFMEILTSY
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]