| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210143
Identifier: 28210143
GI number: 28210143
Start: 381459
End: 382745
Strand: Direct
Name: 28210143
Synonym: CTC00388
Alternate gene names: NA
Gene position: 381459-382745 (Clockwise)
Preceding gene: 28210142
Following gene: 28210145
Centisome position: 13.63
GC content: 26.34
Gene sequence:
>1287_bases ATGAGTAAGAATAAAAATGATGTTGCATGGGAAACCCTATTCAATAAGTATAATATAATTTCTGAGATTGATAAGAATGG AAAATTTGAAATATCAGCAAAAGAAATTAACGAAGTAAGAGAAGCTAGGTTAATGACTAAGTTTGACCATAAGGTGAATT TGCCTAAAATATTTGCAGATAATAAATTATCAATACTACCTATTACAAGAGGCAAGTATGTAATATCTAAATTTGAAGCA TATACTAAATTTGAAAATATAAATCCGGAAATTGTTAAAGTACAATTTCCGGAATATATCACCAGTATAGATTATGAAAA TATAACTAGTGAAGCTATGGCTATTAATTGTGCCTATGTATCAGGAATAATACATGACTTTGTAGAGGATGAAGAGTTAG TTCCAACTGTGAGTGGAAGAATGAGTTCGGATGAATTTAATTTTGAAATTAAAAACACAGGTATAAATAATAAGATGCAA ATTGAAATTAAAAACTCACAGATAGAGATTGATGGTGGCTATGAGGGAATTGAAACGCTAATTTTAATTGAAGCAAAAAA TTCTATATCTGATGATTTTATTATAAGACAGTTATATTATCCATATAGACTATGGAGCAGCAAGGTAGAAAAAAAAGTAA AGCCAGTATTTATGGTATATTCAAATGGTATATATAGTTTTTATGAATATAGTTTTGAGGATGTTCAAAATTATAATTCT TTAAAATTAGTAAAACAAAGAAACTATATAATTGAAGAGGTAGATATTTCATTATCGGATATCATACACATATTTAATAA TACAATAGTTTTAGATGAGCCTAAAATTTCTTTCCCTCAAGCAGATAATTTTAATAGAGTTATTAATTTATGTGAGCTAT TATGTAGAAATGAGATGAGTAAGGAAGAAATAACAGTAAATTATGATTTTGATCCAAGGCAGACAAATTACTATACTGAT GCAGGAAGATATTTAGGATTAATTGATAAAAAAAGAAAAAATGGAGTTATTAAGTTTTTTTTAACGTCAGAAGGAAAAAA ATTATTTAAATTAAGATATAAAGATAGACAGTTAAAATATGTTGAATTAATATTTAAACATAAACCTTTCAGAGAATGTT TTGATGAATGCTTAAAAACAAGCGAAATACCTAATAGACAAGATATTGTTAAGATAATGGAAGATGCAGAAGTGTACAAT GTACAAGCTAAAAGTACTTATAAAAGGAGAGCTTCAACAGTTACTAGATGGATTAATTGGATAATAGAATTAACTAAAAG AGTATAA
Upstream 100 bases:
>100_bases CTATATAAAGATTATAATATAAAAGTAGTCAAAGCTAAACGAACTATAAATTCAAATGGTAATTCTAGAGGGGCGGTAGA TGAAGTATTGGTGAGAAATT
Downstream 100 bases:
>100_bases TAATGTAATTTTAAATATATATTATTATAATGAACCTCTTATCTATATTAAGAAAATATAGAATCTGTTAAGTAGATATG AAAAAATATCTTTAAAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MSKNKNDVAWETLFNKYNIISEIDKNGKFEISAKEINEVREARLMTKFDHKVNLPKIFADNKLSILPITRGKYVISKFEA YTKFENINPEIVKVQFPEYITSIDYENITSEAMAINCAYVSGIIHDFVEDEELVPTVSGRMSSDEFNFEIKNTGINNKMQ IEIKNSQIEIDGGYEGIETLILIEAKNSISDDFIIRQLYYPYRLWSSKVEKKVKPVFMVYSNGIYSFYEYSFEDVQNYNS LKLVKQRNYIIEEVDISLSDIIHIFNNTIVLDEPKISFPQADNFNRVINLCELLCRNEMSKEEITVNYDFDPRQTNYYTD AGRYLGLIDKKRKNGVIKFFLTSEGKKLFKLRYKDRQLKYVELIFKHKPFRECFDECLKTSEIPNRQDIVKIMEDAEVYN VQAKSTYKRRASTVTRWINWIIELTKRV
Sequences:
>Translated_428_residues MSKNKNDVAWETLFNKYNIISEIDKNGKFEISAKEINEVREARLMTKFDHKVNLPKIFADNKLSILPITRGKYVISKFEA YTKFENINPEIVKVQFPEYITSIDYENITSEAMAINCAYVSGIIHDFVEDEELVPTVSGRMSSDEFNFEIKNTGINNKMQ IEIKNSQIEIDGGYEGIETLILIEAKNSISDDFIIRQLYYPYRLWSSKVEKKVKPVFMVYSNGIYSFYEYSFEDVQNYNS LKLVKQRNYIIEEVDISLSDIIHIFNNTIVLDEPKISFPQADNFNRVINLCELLCRNEMSKEEITVNYDFDPRQTNYYTD AGRYLGLIDKKRKNGVIKFFLTSEGKKLFKLRYKDRQLKYVELIFKHKPFRECFDECLKTSEIPNRQDIVKIMEDAEVYN VQAKSTYKRRASTVTRWINWIIELTKRV >Mature_427_residues SKNKNDVAWETLFNKYNIISEIDKNGKFEISAKEINEVREARLMTKFDHKVNLPKIFADNKLSILPITRGKYVISKFEAY TKFENINPEIVKVQFPEYITSIDYENITSEAMAINCAYVSGIIHDFVEDEELVPTVSGRMSSDEFNFEIKNTGINNKMQI EIKNSQIEIDGGYEGIETLILIEAKNSISDDFIIRQLYYPYRLWSSKVEKKVKPVFMVYSNGIYSFYEYSFEDVQNYNSL KLVKQRNYIIEEVDISLSDIIHIFNNTIVLDEPKISFPQADNFNRVINLCELLCRNEMSKEEITVNYDFDPRQTNYYTDA GRYLGLIDKKRKNGVIKFFLTSEGKKLFKLRYKDRQLKYVELIFKHKPFRECFDECLKTSEIPNRQDIVKIMEDAEVYNV QAKSTYKRRASTVTRWINWIIELTKRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50473; Mature: 50342
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNKNDVAWETLFNKYNIISEIDKNGKFEISAKEINEVREARLMTKFDHKVNLPKIFAD CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECC NKLSILPITRGKYVISKFEAYTKFENINPEIVKVQFPEYITSIDYENITSEAMAINCAYV CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCHHHEEEHHHH SGIIHDFVEDEELVPTVSGRMSSDEFNFEIKNTGINNKMQIEIKNSQIEIDGGYEGIETL HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEECCCCCCEEEE ILIEAKNSISDDFIIRQLYYPYRLWSSKVEKKVKPVFMVYSNGIYSFYEYSFEDVQNYNS EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHHCCCCC LKLVKQRNYIIEEVDISLSDIIHIFNNTIVLDEPKISFPQADNFNRVINLCELLCRNEMS EEEEHHCCCEEEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC KEEITVNYDFDPRQTNYYTDAGRYLGLIDKKRKNGVIKFFLTSEGKKLFKLRYKDRQLKY CCEEEEEECCCCCCCCEECCCCCEEECEECCCCCCEEEEEEECCCCEEEEEECCCCCHHH VELIFKHKPFRECFDECLKTSEIPNRQDIVKIMEDAEVYNVQAKSTYKRRASTVTRWINW HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH IIELTKRV HHHHHHCC >Mature Secondary Structure SKNKNDVAWETLFNKYNIISEIDKNGKFEISAKEINEVREARLMTKFDHKVNLPKIFAD CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEECC NKLSILPITRGKYVISKFEAYTKFENINPEIVKVQFPEYITSIDYENITSEAMAINCAYV CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCCHHHEEEHHHH SGIIHDFVEDEELVPTVSGRMSSDEFNFEIKNTGINNKMQIEIKNSQIEIDGGYEGIETL HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEECCCCCCEEEE ILIEAKNSISDDFIIRQLYYPYRLWSSKVEKKVKPVFMVYSNGIYSFYEYSFEDVQNYNS EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCHHHHCCCCC LKLVKQRNYIIEEVDISLSDIIHIFNNTIVLDEPKISFPQADNFNRVINLCELLCRNEMS EEEEHHCCCEEEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC KEEITVNYDFDPRQTNYYTDAGRYLGLIDKKRKNGVIKFFLTSEGKKLFKLRYKDRQLKY CCEEEEEECCCCCCCCEECCCCCEEECEECCCCCCEEEEEEECCCCEEEEEECCCCCHHH VELIFKHKPFRECFDECLKTSEIPNRQDIVKIMEDAEVYNVQAKSTYKRRASTVTRWINW HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHH IIELTKRV HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA