Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28210033

Identifier: 28210033

GI number: 28210033

Start: 246444

End: 247214

Strand: Direct

Name: 28210033

Synonym: CTC00270

Alternate gene names: NA

Gene position: 246444-247214 (Clockwise)

Preceding gene: 28210032

Following gene: 28210034

Centisome position: 8.8

GC content: 22.57

Gene sequence:

>771_bases
ATGGAAGCGGAGGGTGTTATGATTAGAGAAAATGCTTTTTTAGAGTATTTAAAAGATATAAATATATTTGTAGATGAATC
TATAGGTTCTGACATTAAAGTTAAAAATGTAGATGAGACTAAATTAGAAAAACAATTATATATAATAAATGATTTTCATA
AAAGGATTATGGGATATAAGAATATAAAAGATAGATTAGATAGTGGGATTGGGAAAACAGTAGAAGAATATAAAGTGTAT
ATAAAAAAAGTAAATAGAGATTTAAAAAGAATTAAATCAGAAGGACCTAGGAATGCCTTTGAAAATAAATTTTTAGAAGT
AGGAGAAGAACATATAGAAAAAGGAAAAGCAGCTATTAAAAATATATATAAAAATGACTACTATTCATTAATAACTAGAA
GCATGCAAAATAAAGAAATAATATTAGACAAAGTAGATTTTAAGCATTTGATAAAAGAAGAAGAATTCATAAAGGTAAAA
ACTATAAGTAAATGTAAATATAATTTAGTAGAAATGGATTGTTTTTATCTATTATCTAGATATAAAAGAAAAGGAGTTAA
TTTAAATTATTATATGTTAATAGATAGATTTTGCCATATGGAGAATTTAGGACAAAGCAGTTATCAATTTATATTATCAC
TTTTATCATTTCCTTATGAGTTTGTAAAGACAATTATTAACTATAGATATGACAGAAAAAGTTTAAGTGATTATGAGTAC
TTAGTAATATTGGAAAAATTAATTGAACAAAAAGATTTGATTTCAATATAG

Upstream 100 bases:

>100_bases
CAACCTTGGAAGGAAAAAGTTTTTATAAATAAAATAAAAAGAATAGTGGATGACAGAGAAGCAAAACAGGAATTTGTAGA
GGAGTTTAGATGTATAAACT

Downstream 100 bases:

>100_bases
GGGTGGTGGAATGAAAGGAATATATTCTACTAGGAATTACTTGGCACAATATGACTTAGATTCAACATTGTTTGAAAATT
TTAAGGTAAAGCCTAAGGAA

Product: putative spore coat protein

Products: NA

Alternate protein names: Spore Coat Protein CotS

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MEAEGVMIRENAFLEYLKDINIFVDESIGSDIKVKNVDETKLEKQLYIINDFHKRIMGYKNIKDRLDSGIGKTVEEYKVY
IKKVNRDLKRIKSEGPRNAFENKFLEVGEEHIEKGKAAIKNIYKNDYYSLITRSMQNKEIILDKVDFKHLIKEEEFIKVK
TISKCKYNLVEMDCFYLLSRYKRKGVNLNYYMLIDRFCHMENLGQSSYQFILSLLSFPYEFVKTIINYRYDRKSLSDYEY
LVILEKLIEQKDLISI

Sequences:

>Translated_256_residues
MEAEGVMIRENAFLEYLKDINIFVDESIGSDIKVKNVDETKLEKQLYIINDFHKRIMGYKNIKDRLDSGIGKTVEEYKVY
IKKVNRDLKRIKSEGPRNAFENKFLEVGEEHIEKGKAAIKNIYKNDYYSLITRSMQNKEIILDKVDFKHLIKEEEFIKVK
TISKCKYNLVEMDCFYLLSRYKRKGVNLNYYMLIDRFCHMENLGQSSYQFILSLLSFPYEFVKTIINYRYDRKSLSDYEY
LVILEKLIEQKDLISI
>Mature_256_residues
MEAEGVMIRENAFLEYLKDINIFVDESIGSDIKVKNVDETKLEKQLYIINDFHKRIMGYKNIKDRLDSGIGKTVEEYKVY
IKKVNRDLKRIKSEGPRNAFENKFLEVGEEHIEKGKAAIKNIYKNDYYSLITRSMQNKEIILDKVDFKHLIKEEEFIKVK
TISKCKYNLVEMDCFYLLSRYKRKGVNLNYYMLIDRFCHMENLGQSSYQFILSLLSFPYEFVKTIINYRYDRKSLSDYEY
LVILEKLIEQKDLISI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30618; Mature: 30618

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAEGVMIRENAFLEYLKDINIFVDESIGSDIKVKNVDETKLEKQLYIINDFHKRIMGYK
CCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCHH
NIKDRLDSGIGKTVEEYKVYIKKVNRDLKRIKSEGPRNAFENKFLEVGEEHIEKGKAAIK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NIYKNDYYSLITRSMQNKEIILDKVDFKHLIKEEEFIKVKTISKCKYNLVEMDCFYLLSR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKRKGVNLNYYMLIDRFCHMENLGQSSYQFILSLLSFPYEFVKTIINYRYDRKSLSDYEY
HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
LVILEKLIEQKDLISI
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEAEGVMIRENAFLEYLKDINIFVDESIGSDIKVKNVDETKLEKQLYIINDFHKRIMGYK
CCCCCEEEHHHHHHHHHHHHHHEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCHH
NIKDRLDSGIGKTVEEYKVYIKKVNRDLKRIKSEGPRNAFENKFLEVGEEHIEKGKAAIK
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
NIYKNDYYSLITRSMQNKEIILDKVDFKHLIKEEEFIKVKTISKCKYNLVEMDCFYLLSR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKRKGVNLNYYMLIDRFCHMENLGQSSYQFILSLLSFPYEFVKTIINYRYDRKSLSDYEY
HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
LVILEKLIEQKDLISI
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA