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The map label for this gene is ybjS [H]

Identifier: 27365196

GI number: 27365196

Start: 1842758

End: 1843744

Strand: Reverse

Name: ybjS [H]

Synonym: VV1_1845

Alternate gene names: 27365196

Gene position: 1843744-1842758 (Counterclockwise)

Preceding gene: 27365197

Following gene: 27365195

Centisome position: 56.18

GC content: 42.96

Gene sequence:

>987_bases
ATGAAAATATTAGTCACAGGTGGCAGTGGTATGCTGGGTAGTGCGATTCTACGGATGTTTCACCAGCAACATGAACTGCA
CTTTACTGCGCGAAATACTGTCATCGCAAAACAACTCACCGACCAATTCAATGTCACACCGCATTTACTCAATTTAGAGG
ATAAATCAGCGGTTTATGATGTATGCCAAGGTATTGATGGGATCATCCATTGCGCTGCGCTCTCAAGCCCTTGGGGAAAG
TGGGAAGCGTTTTATCAATCCAATGTAGACACCACAAAAAACCTCATCAGCGCAGCGAATGCCCATCAGGTATCACGTTT
TATCCATATTTCCTCCACCAGCGTCTATTTTGACTACAAAGACAGGTGGAATATTCGAGAAACAGACGATATTGCTTCGC
GTTGGTGTAATGATTACGCGCACACAAAATACTTGTCTGAACTTGAAGCCATACAGGGACAAAGCAAAACGATCATTTTA
AGACCTCGTGGTATTTTCGGTCCTAACGATCGCGCGATTATCCCTAGGGTACTTAAAGCGATAAAAAACGACACACTACT
TCTGCCATCCGGGCGAAATCCGGTTGTTGATCTGACTTATGTCGATAATGTAGCCCATGCTGCCATGCTTGCTTGTACTC
AAGCGGAACAACTTCAACATGGTGACATATTCAATATATCCAACAACGAGCCAATGCCTATTGAGACCGTGCTAAGAGCT
TTGTGTGAAGCATTGAACATAAACGTTAAATTAATATCACTCCCATACCGCTTAGTGTTGCCGTTATTAAAACTCAGTGA
GCAAATACGGATGCGCTTACCGTACCAACCGGAGCCAAAGCTCACTTCATACAGCGCAGGGTTATTTAACTACCACCAAA
CTCTAGATATCAGTAAGGCGCAGAAAAAGCTGAATTACCAACCGCTTTTTTCAGTTCAAGAAGGAATCCAACAGTATGCA
GACTGGTCTAAAAATAAAAATCTTTGA

Upstream 100 bases:

>100_bases
ACTTGCACTGGCTACGCAACCAACCAGGCACACAAGGGAAACATGTTTTATTGGCGGGCACTGCTGCTGGGCTCTCGTTG
GGGATGGGAGTCCTTAAACT

Downstream 100 bases:

>100_bases
GGCTGGGCACTGCGTACACCCTAGTTTTGTCGTCAAACCCGGCTCTGGGTTAAAGCCAAGATCGTTTCCAGCGGCTGTCG
CGTTAATTCAACACCCAACT

Product: UDP-glucose 4-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKILVTGGSGMLGSAILRMFHQQHELHFTARNTVIAKQLTDQFNVTPHLLNLEDKSAVYDVCQGIDGIIHCAALSSPWGK
WEAFYQSNVDTTKNLISAANAHQVSRFIHISSTSVYFDYKDRWNIRETDDIASRWCNDYAHTKYLSELEAIQGQSKTIIL
RPRGIFGPNDRAIIPRVLKAIKNDTLLLPSGRNPVVDLTYVDNVAHAAMLACTQAEQLQHGDIFNISNNEPMPIETVLRA
LCEALNINVKLISLPYRLVLPLLKLSEQIRMRLPYQPEPKLTSYSAGLFNYHQTLDISKAQKKLNYQPLFSVQEGIQQYA
DWSKNKNL

Sequences:

>Translated_328_residues
MKILVTGGSGMLGSAILRMFHQQHELHFTARNTVIAKQLTDQFNVTPHLLNLEDKSAVYDVCQGIDGIIHCAALSSPWGK
WEAFYQSNVDTTKNLISAANAHQVSRFIHISSTSVYFDYKDRWNIRETDDIASRWCNDYAHTKYLSELEAIQGQSKTIIL
RPRGIFGPNDRAIIPRVLKAIKNDTLLLPSGRNPVVDLTYVDNVAHAAMLACTQAEQLQHGDIFNISNNEPMPIETVLRA
LCEALNINVKLISLPYRLVLPLLKLSEQIRMRLPYQPEPKLTSYSAGLFNYHQTLDISKAQKKLNYQPLFSVQEGIQQYA
DWSKNKNL
>Mature_328_residues
MKILVTGGSGMLGSAILRMFHQQHELHFTARNTVIAKQLTDQFNVTPHLLNLEDKSAVYDVCQGIDGIIHCAALSSPWGK
WEAFYQSNVDTTKNLISAANAHQVSRFIHISSTSVYFDYKDRWNIRETDDIASRWCNDYAHTKYLSELEAIQGQSKTIIL
RPRGIFGPNDRAIIPRVLKAIKNDTLLLPSGRNPVVDLTYVDNVAHAAMLACTQAEQLQHGDIFNISNNEPMPIETVLRA
LCEALNINVKLISLPYRLVLPLLKLSEQIRMRLPYQPEPKLTSYSAGLFNYHQTLDISKAQKKLNYQPLFSVQEGIQQYA
DWSKNKNL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=338, Percent_Identity=29.8816568047337, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI8393516, Length=338, Percent_Identity=29.8816568047337, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI4504507, Length=350, Percent_Identity=26.2857142857143, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI260763931, Length=350, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504509, Length=350, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI239745448, Length=350, Percent_Identity=24.2857142857143, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI310132178, Length=350, Percent_Identity=24.2857142857143, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI310113012, Length=350, Percent_Identity=24.2857142857143, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI116268111, Length=261, Percent_Identity=26.0536398467433, Blast_Score=73, Evalue=4e-13,
Organism=Escherichia coli, GI87081792, Length=336, Percent_Identity=35.7142857142857, Blast_Score=197, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI17509709, Length=285, Percent_Identity=25.9649122807018, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17570557, Length=336, Percent_Identity=24.4047619047619, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321437, Length=344, Percent_Identity=28.1976744186047, Blast_Score=102, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37166; Mature: 37166

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVTGGSGMLGSAILRMFHQQHELHFTARNTVIAKQLTDQFNVTPHLLNLEDKSAVYD
CEEEEECCCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCEEECCCHHHHHHH
VCQGIDGIIHCAALSSPWGKWEAFYQSNVDTTKNLISAANAHQVSRFIHISSTSVYFDYK
HHHCHHHHEEHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEEEC
DRWNIRETDDIASRWCNDYAHTKYLSELEAIQGQSKTIILRPRGIFGPNDRAIIPRVLKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHH
IKNDTLLLPSGRNPVVDLTYVDNVAHAAMLACTQAEQLQHGDIFNISNNEPMPIETVLRA
HCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
LCEALNINVKLISLPYRLVLPLLKLSEQIRMRLPYQPEPKLTSYSAGLFNYHQTLDISKA
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHH
QKKLNYQPLFSVQEGIQQYADWSKNKNL
HHHCCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKILVTGGSGMLGSAILRMFHQQHELHFTARNTVIAKQLTDQFNVTPHLLNLEDKSAVYD
CEEEEECCCCHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCEEECCCHHHHHHH
VCQGIDGIIHCAALSSPWGKWEAFYQSNVDTTKNLISAANAHQVSRFIHISSTSVYFDYK
HHHCHHHHEEHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCEEEEEEC
DRWNIRETDDIASRWCNDYAHTKYLSELEAIQGQSKTIILRPRGIFGPNDRAIIPRVLKA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHH
IKNDTLLLPSGRNPVVDLTYVDNVAHAAMLACTQAEQLQHGDIFNISNNEPMPIETVLRA
HCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH
LCEALNINVKLISLPYRLVLPLLKLSEQIRMRLPYQPEPKLTSYSAGLFNYHQTLDISKA
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHH
QKKLNYQPLFSVQEGIQQYADWSKNKNL
HHHCCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]