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The map label for this gene is yggS [C]

Identifier: 27364896

GI number: 27364896

Start: 1498019

End: 1498729

Strand: Reverse

Name: yggS [C]

Synonym: VV1_1525

Alternate gene names: 27364896

Gene position: 1498729-1498019 (Counterclockwise)

Preceding gene: 27364899

Following gene: 27364895

Centisome position: 45.67

GC content: 48.95

Gene sequence:

>711_bases
ATGAACAGTATTCAACAAAACATTGAACATATCACCACACAGATTCACGACTCTACGCAAAAGTGTGGACGAGCTCGAGA
CTCAGTGCAACTTTTAGCGGTCAGTAAAACCAAACCTGTCGAGGCGATTCTCGAAGCCTATCATGCAGGTCAAAGGGCTT
TTGGTGAGAACTACGTGCAAGAAGGCGTAGAAAAAGTCCGATTTTTTGCCGAGCAACACCCTGAGAAATCCATCGAGTGG
CATTTTATCGGCCCCATTCAATCGAATAAAAGTCGCTTAGTGGCGGAGCACTTTGCGTGGGTACATACCATTGATCGTGA
CAAAATCGCTCAACGTTTAAATGATCAACGCCCAGCCGAGCTCCCTCCGCTGCAAGTGCTGATCCAAGTGAACACCAGCG
GCGAAGCCTCTAAGTCAGGCGTATCCGGTGAGGAAATATTTGCACTTGCTGAGTTGATTTCTACCCTCCCGAACCTCACG
TTAAGAGGGTTGATGTCAATCCCTGAAAACGTCGATGACCACGCTTCTCAGTTGGCTGCATTCCAACCGCTTGCTGAGCT
ACAACAACGCTTGGTTCAACGCTATCCAAGCGTGGACACTTTATCGATGGGCATGAGTGGCGACATGGATGCCGCCATCG
AATCAGGTTCAACCATGGTGCGTATTGGCACCGCCATTTTTGGCCATCGCGATTACAGCAACAAAGCGTAA

Upstream 100 bases:

>100_bases
GAGGCACACCCGCAGAAAGATGTAGATCTGATGCGTTATGTTTTACACTAAAATCCAGTAACTCAGTGATATCCATTATT
TTTCCCTTAAAAGACTTGCG

Downstream 100 bases:

>100_bases
CTCGGCGACTTTTACTTACTAGCGGAACAGAAATATGGAACATAAGAACATCGCTTTTATCGGTGCTGGCAATATGGTGA
GAGCCATTGTCTCTGGCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA

Sequences:

>Translated_236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
>Mature_236_residues
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEW
HFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLT
LRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=215, Percent_Identity=43.7209302325581, Blast_Score=143, Evalue=1e-34,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=59.1489361702128, Blast_Score=279, Evalue=1e-76,
Organism=Caenorhabditis elegans, GI17533025, Length=242, Percent_Identity=39.2561983471074, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=38.9908256880734, Blast_Score=128, Evalue=1e-30,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=44.4444444444444, Blast_Score=155, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26201; Mature: 26201

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAE
HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
LPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHASQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
FQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCC
>Mature Secondary Structure
MNSIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EGVEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAE
HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
LPPLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHASQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
FQPLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSNKA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCEEEEEHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]