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The map label for this gene is yqgF [C]

Identifier: 27364899

GI number: 27364899

Start: 1501009

End: 1501431

Strand: Reverse

Name: yqgF [C]

Synonym: VV1_1528

Alternate gene names: 27364899

Gene position: 1501431-1501009 (Counterclockwise)

Preceding gene: 27364900

Following gene: 27364896

Centisome position: 45.75

GC content: 47.99

Gene sequence:

>423_bases
ATGTCTCGCACCATCATGGCATTCGATTTTGGCACCAAAAGCATTGGTAGTGCCATCGGCCAAGAAATTACTGGCACCGC
ATCACCACTGAAGGCTTTCAAAGCCAATGACGGCATTCCAAATTGGGATGAGATTGAAAAGCAAATCAAAGAGTGGCAAC
CCAATTTATTGGTGGTGGGACTGCCGACAGATTTGCACGGCAAGGCCTTAGAAACCATTACCCCACGCGCGAAGAAGTTT
GCTCAGCGCCTACAAGGGCGCTTTGGTCTTCCGGTTGAATTGCATGATGAACGCCTATCGACTACAGAAGCGCGTTCTGA
GCTGTTCTCTATGGGCGGTTACAAAGCTTTGAGCAAAGGTAATGTTGATTGCCAATCTGCGGTGATTATTTTAGAGAGTT
GGTTTGAAGCTCAGTGGGGCTAA

Upstream 100 bases:

>100_bases
AGCAATGCGCTGGCAAAAAGCCGTGCAAATGCTTGGAATTCACGCGTCTCAGCTTTCCGATCAAGCTGGTCACGCTTAAC
CCGTTTGACTTAGGTTATTT

Downstream 100 bases:

>100_bases
CTCACAGAAGACTCTTCACCTTCGCACTCCCTAAACACAAAACGAGAGACTTCTAGTCTCTCGTTTTTTCATGGTGTTTT
AGCACTGTCGAACTAATCCA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGLPTDLHGKALETITPRAKKF
AQRLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDCQSAVIILESWFEAQWG

Sequences:

>Translated_140_residues
MSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGLPTDLHGKALETITPRAKKF
AQRLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDCQSAVIILESWFEAQWG
>Mature_139_residues
SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVGLPTDLHGKALETITPRAKKFA
QRLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKGNVDCQSAVIILESWFEAQWG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=139, Percent_Identity=62.589928057554, Blast_Score=182, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15467; Mature: 15336

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVG
CCCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKALETITPRAKKFAQRLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKG
CCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCC
NVDCQSAVIILESWFEAQWG
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKANDGIPNWDEIEKQIKEWQPNLLVVG
CCEEEEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKALETITPRAKKFAQRLQGRFGLPVELHDERLSTTEARSELFSMGGYKALSKG
CCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCC
NVDCQSAVIILESWFEAQWG
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA