Click here to switch to the map view.

The map label for this gene is yydH

Identifier: 255767867

GI number: 255767867

Start: 4125742

End: 4126500

Strand: Reverse

Name: yydH

Synonym: BSU40160

Alternate gene names: 255767867

Gene position: 4126500-4125742 (Counterclockwise)

Preceding gene: 16081069

Following gene: 16081067

Centisome position: 97.89

GC content: 26.88

Gene sequence:

>759_bases
ATGAAAATTTTAAAGTATGAAGATGAAAAATATGAAGTGCTTGTGCAAAACAACGTATTTATAAAAGACAAAAAAAGCGG
AGAATACTATAAAAATAGTTTAAATTCTCTGTCAGATAAACAATTATTACGTTTTAAAATGTATAAAGAGAAAGTATCAC
CAAAGTTTTTTTATCTGTTCTTATCCTTTACGGCTCTCATGTTCATATTAAATTATATTCATTTAATAAAATTGCAAAAT
GGATTGTCCTCAGTATTTTACGGCTGGAAAATGTGGATAATTATAGTTATTTATTTTATAATGAATATAGTGCTTCATGA
ACTGGGACATATTTATTCCTTAAAATTTTTCGGGAAAAACTTTGATAAAGTGGGATTCAAACTGAATTTTTATGTATTTC
CTGCTTTTTATGTCCAATTGAATGAAACCTACATGCTATCAAGAAATGAAAAGATAATCGTTCATTTATTTGGCTTGTTT
ATCAATTATCTTTTAATAAATACATTAGAATTAATAAATCAATTTACATTTTCCAGTGAAGCATTAACTATGGCATTTAT
GCTTTTCTCGTCTACTTTATTGTGGAACTTAATCCCAATATTGAATTCTGATGGTTACAAAATTCTTTTAGCTTTTCTGA
GCTTAGATGAATATAGCCGTTTTAAGACAAATCATTGGTTAGTTCTTACGATTCAAATTATAGGGATTGGCCTTGCAGTG
AATTCAGTTGTACATTGGATATTATATATTGTAAACTAG

Upstream 100 bases:

>100_bases
ATTCCTTATGAATTTTCCTCTATTTGTGGAGTTTGTGGTTCCTTATTCAACTCTGCAGAAAAAATAAACTACTTCTATCC
TTATATGGAAAAATACTATA

Downstream 100 bases:

>100_bases
AGTAAAAGATCTCCAAATTAGCCATCTAAAAACATTTCTTTCGCTTCCGGATCGGAAACGAAAGAGGTACCTCAAAAGCT
TAGACATTAGTAACAAATCA

Product: membrane metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKILKYEDEKYEVLVQNNVFIKDKKSGEYYKNSLNSLSDKQLLRFKMYKEKVSPKFFYLFLSFTALMFILNYIHLIKLQN
GLSSVFYGWKMWIIIVIYFIMNIVLHELGHIYSLKFFGKNFDKVGFKLNFYVFPAFYVQLNETYMLSRNEKIIVHLFGLF
INYLLINTLELINQFTFSSEALTMAFMLFSSTLLWNLIPILNSDGYKILLAFLSLDEYSRFKTNHWLVLTIQIIGIGLAV
NSVVHWILYIVN

Sequences:

>Translated_252_residues
MKILKYEDEKYEVLVQNNVFIKDKKSGEYYKNSLNSLSDKQLLRFKMYKEKVSPKFFYLFLSFTALMFILNYIHLIKLQN
GLSSVFYGWKMWIIIVIYFIMNIVLHELGHIYSLKFFGKNFDKVGFKLNFYVFPAFYVQLNETYMLSRNEKIIVHLFGLF
INYLLINTLELINQFTFSSEALTMAFMLFSSTLLWNLIPILNSDGYKILLAFLSLDEYSRFKTNHWLVLTIQIIGIGLAV
NSVVHWILYIVN
>Mature_252_residues
MKILKYEDEKYEVLVQNNVFIKDKKSGEYYKNSLNSLSDKQLLRFKMYKEKVSPKFFYLFLSFTALMFILNYIHLIKLQN
GLSSVFYGWKMWIIIVIYFIMNIVLHELGHIYSLKFFGKNFDKVGFKLNFYVFPAFYVQLNETYMLSRNEKIIVHLFGLF
INYLLINTLELINQFTFSSEALTMAFMLFSSTLLWNLIPILNSDGYKILLAFLSLDEYSRFKTNHWLVLTIQIIGIGLAV
NSVVHWILYIVN

Specific function: Required for production of the modified peptide yydF (Probable). May process the precursor form of yydF to release the active peptide (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYDH_BACSU (Q45594)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   F70091
- RefSeq:   NP_391896.2
- ProteinModelPortal:   Q45594
- EnsemblBacteria:   EBBACT00000002613
- GeneID:   937745
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40160
- NMPDR:   fig|224308.1.peg.4022
- GenoList:   BSU40160
- GeneTree:   EBGT00050000005247
- BioCyc:   BSUB:BSU40160-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29942; Mature: 29942

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: ACT_SITE 107-107

Signals:

None

Transmembrane regions:

HASH(0x12bb7d70)-; HASH(0x12e465fc)-; HASH(0x13be8e8c)-; HASH(0x133c0f54)-; HASH(0x136435f8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKYEDEKYEVLVQNNVFIKDKKSGEYYKNSLNSLSDKQLLRFKMYKEKVSPKFFYLF
CCCEEECCCCEEEEEECCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
LSFTALMFILNYIHLIKLQNGLSSVFYGWKMWIIIVIYFIMNIVLHELGHIYSLKFFGKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCC
FDKVGFKLNFYVFPAFYVQLNETYMLSRNEKIIVHLFGLFINYLLINTLELINQFTFSSE
CHHCCEEEEEEEEEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ALTMAFMLFSSTLLWNLIPILNSDGYKILLAFLSLDEYSRFKTNHWLVLTIQIIGIGLAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHH
NSVVHWILYIVN
HHHHHHHHHCCH
>Mature Secondary Structure
MKILKYEDEKYEVLVQNNVFIKDKKSGEYYKNSLNSLSDKQLLRFKMYKEKVSPKFFYLF
CCCEEECCCCEEEEEECCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
LSFTALMFILNYIHLIKLQNGLSSVFYGWKMWIIIVIYFIMNIVLHELGHIYSLKFFGKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCC
FDKVGFKLNFYVFPAFYVQLNETYMLSRNEKIIVHLFGLFINYLLINTLELINQFTFSSE
CHHCCEEEEEEEEEEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ALTMAFMLFSSTLLWNLIPILNSDGYKILLAFLSLDEYSRFKTNHWLVLTIQIIGIGLAV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHH
NSVVHWILYIVN
HHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377