Click here to switch to the map view.

The map label for this gene is ydhB

Identifier: 255767147

GI number: 255767147

Start: 614885

End: 615622

Strand: Reverse

Name: ydhB

Synonym: BSU05690

Alternate gene names: 255767147

Gene position: 615622-614885 (Counterclockwise)

Preceding gene: 16077640

Following gene: 16077634

Centisome position: 14.6

GC content: 44.17

Gene sequence:

>738_bases
ATGCTCATTATTCTTGTTATGTTTCTTCTAGGAATTATTTTAGGCTTTATTGGCGCCGGTGGAGCCGGCTTTGTCATTGC
CCTTTTAACGCTTCTTTTCCATATCCCGATTCATACGGCTTTAGGCACTTCGCTTGCCGGCATGGCTTTTACAAGCTTAT
CAGGGGCATACAGCCACTATCGCGAGGGTAACATTCAAATGAAAATCGGCTTAATAGTCGGAGGCTTTGCTGCGGTTGGC
TCATTTTTCGGCGCCAAGCTGACTTCTTTTATTCCGGCTGATTTGCTTCATTATTTGACGGCTGGAATGTTATTTTTATC
AGCAATTCTCATTTTAATCAGATTATTTATTTTAAAAGAGAAGGCTCAAGTGAATCAAAGCACTCTTTCAACGTATACGA
GAGCGGTCATCTTAGGAATTGCAGCCGGCGTTCTTTCCGGCACATTCGGCATCGGGTCGGCACCTTTTATTCAAATCGGT
TTAATGATTATGCTGAATCTGTCCATTCGCCATTCTGTCGGAACGACGATGCTTGTGATCATCCCTCTGGCTGTAGGTGG
AGGCATCGGATATATTACAGAAGGTTTTGTTGATTACGTTTTACTTGTCAAAGTTCTGGTCGGGACAATGTGCGGGGCCT
ATGTAGGCGCGAAATTCACCAACCTCATGCCAAAGGTGGTTTTGAAATCAGCCATCTTTTTGACTCCGGCGATTGCAGGC
CTGCTGTTGTTATTCTAA

Upstream 100 bases:

>100_bases
ACTGAAAAAACGGCGTGTTTTTCTTCGTCAATAGGACACCATACCTCCGCCAGAATAGCGCACGATTACATTTTTACATC
TTTTCAATGGAGGAAAAAAT

Downstream 100 bases:

>100_bases
ATAAAACAAAAAACCTGACGTCATGTCAGGTTTTTTTATGAATTCTGCCCTACTCGTTCTTTCGTTAATCCAAAAAACGC
CAGTGAGCCGATGACAGCTG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHYREGNIQMKIGLIVGGFAAVG
SFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLFILKEKAQVNQSTLSTYTRAVILGIAAGVLSGTFGIGSAPFIQIG
LMIMLNLSIRHSVGTTMLVIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAKFTNLMPKVVLKSAIFLTPAIAG
LLLLF

Sequences:

>Translated_245_residues
MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHYREGNIQMKIGLIVGGFAAVG
SFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLFILKEKAQVNQSTLSTYTRAVILGIAAGVLSGTFGIGSAPFIQIG
LMIMLNLSIRHSVGTTMLVIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAKFTNLMPKVVLKSAIFLTPAIAG
LLLLF
>Mature_245_residues
MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHYREGNIQMKIGLIVGGFAAVG
SFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLFILKEKAQVNQSTLSTYTRAVILGIAAGVLSGTFGIGSAPFIQIG
LMIMLNLSIRHSVGTTMLVIIPLAVGGGIGYITEGFVDYVLLVKVLVGTMCGAYVGAKFTNLMPKVVLKSAIFLTPAIAG
LLLLF

Specific function: Unknown

COG id: COG0730

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0721 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDHB_BACSU (O05493)

Other databases:

- EMBL:   D88802
- EMBL:   AL009126
- PIR:   F69783
- RefSeq:   NP_388450.2
- EnsemblBacteria:   EBBACT00000000148
- GeneID:   939893
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05690
- NMPDR:   fig|224308.1.peg.569
- GenoList:   BSU05690
- GeneTree:   EBGT00050000001254
- HOGENOM:   HBG337819
- ProtClustDB:   CLSK886789
- BioCyc:   BSUB:BSU05690-MONOMER
- InterPro:   IPR002781

Pfam domain/function: PF01925 DUF81

EC number: NA

Molecular weight: Translated: 25657; Mature: 25657

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc677a70)-; HASH(0xcfff454)-; HASH(0xd5246a4)-; HASH(0xd3e7f6c)-; HASH(0xd622808)-; HASH(0xc7846dc)-; HASH(0xba80cd4)-; HASH(0xd54a234)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHH
>Mature Secondary Structure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HHHHH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377