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The map label for this gene is ydgJ

Identifier: 16077634

GI number: 16077634

Start: 612836

End: 613330

Strand: Reverse

Name: ydgJ

Synonym: BSU05670

Alternate gene names: 16077634

Gene position: 613330-612836 (Counterclockwise)

Preceding gene: 255767147

Following gene: 16077633

Centisome position: 14.55

GC content: 45.25

Gene sequence:

>495_bases
TTGACGTGTCAATCATTGATATATCAATTAATAGTTTTGACAGGAAAGAAGGGATGGGTTTTGGCGTCATTTTGTTCAGA
GGAAGCCGAGATTTTATATCAGCTGCAAGGCGTGAACAAGGTGATTGGCGTGAAGTTCGAGGCATGCACGGGCATCAGCC
AATCTCGTTTGGAATTGCTGACATTGCTTTATCATGCAGATGAGATCAGTCAAAGCGACCTTCAAAAGAAAGTAAATATC
GATAGCGCAGCCGTTACCAGACACCTGAAACAGCTGGAATCCAAAGGCATGGTATCAAGGCGGCGCAAGCCTGAGGACAA
CCGCATCACCCTTGTTCGGTTAACAGACCAAGGAAGAGAGCGAATTGAGTCTTCTAAGAAGGAAAAGGAGCGTTTCATGA
AGGAAATGCTCGCAAATGTAAGCGCAGAAGAACGCCGCCTGCTCATTGATGTGCTGGCGCGCATGCGAAACAATATAAAT
AATATCGAAGCTTAA

Upstream 100 bases:

>100_bases
AGCTTTTTTTGCTAAGTTCTAGCCTAGCGAATTTTATGCGCTGGGAGGTTGTTCAAAAGTGCAAATGGCTTGCAAGATGA
AATCAATCGTTGTATATTAA

Downstream 100 bases:

>100_bases
GAGGAGTGTATCAACATGATCAAAACAAACGATTTTATGGAAATTATGAAAGGCCGCCGTTCTATCCGCAACTATGATCC
GGCAGTAAAAATCAGCAAAG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGVKFEACTGISQSRLELLTLLYHADEISQSDLQKKVNI
DSAAVTRHLKQLESKGMVSRRRKPEDNRITLVRLTDQGRERIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNIN
NIEA

Sequences:

>Translated_164_residues
MTCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGVKFEACTGISQSRLELLTLLYHADEISQSDLQKKVNI
DSAAVTRHLKQLESKGMVSRRRKPEDNRITLVRLTDQGRERIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNIN
NIEA
>Mature_163_residues
TCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGVKFEACTGISQSRLELLTLLYHADEISQSDLQKKVNID
SAAVTRHLKQLESKGMVSRRRKPEDNRITLVRLTDQGRERIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNINN
IEA

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDGJ_BACSU (P96708)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   D69783
- RefSeq:   NP_388448.1
- ProteinModelPortal:   P96708
- SMR:   P96708
- EnsemblBacteria:   EBBACT00000001959
- GeneID:   938036
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05670
- NMPDR:   fig|224308.1.peg.567
- GenoList:   BSU05670
- GeneTree:   EBGT00050000001095
- HOGENOM:   HBG728159
- OMA:   KEISHVF
- PhylomeDB:   P96708
- ProtClustDB:   CLSK2752328
- BioCyc:   BSUB:BSU05670-MONOMER
- GO:   GO:0005622
- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00418
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 18809; Mature: 18678

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGVKFEACTGISQSRLELL
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCHHHHHHH
TLLYHADEISQSDLQKKVNIDSAAVTRHLKQLESKGMVSRRRKPEDNRITLVRLTDQGRE
HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHH
RIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNINNIEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TCQSLIYQLIVLTGKKGWVLASFCSEEAEILYQLQGVNKVIGVKFEACTGISQSRLELL
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCHHHHHHH
TLLYHADEISQSDLQKKVNIDSAAVTRHLKQLESKGMVSRRRKPEDNRITLVRLTDQGRE
HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHH
RIESSKKEKERFMKEMLANVSAEERRLLIDVLARMRNNINNIEA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377