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The map label for this gene is ydhF

Identifier: 16077640

GI number: 16077640

Start: 619321

End: 620031

Strand: Reverse

Name: ydhF

Synonym: BSU05730

Alternate gene names: 16077640

Gene position: 620031-619321 (Counterclockwise)

Preceding gene: 255767150

Following gene: 255767147

Centisome position: 14.71

GC content: 40.93

Gene sequence:

>711_bases
ATGAGAAGAATTCTTTCAATTCTCGTTTTTGCTATCATGCTTGCGGGCTGCTCATCAAACGCCAGTACTGAAAAACAGCA
TGCAGGCGGGGAGAAAACAGTAAAAGCTGAGCCGCAAAGCACTTCATCCCAGAAGGACAGCACAGATGATTATCAGCCTA
ATTCCCAGGTAACTGATGACCGGACATTGCATAAGGTCGGCCAAACGTTTTCAGATGATAAAGGAAAAGCTGTCTTAAAA
GATATCAAACAAGTGAACAAAACCTATAAAATTGGCGACGTGGAGTTAACAGTAAAAGAAATGAAGCTGATCCACTTGCG
CCCGGACTACAGCATGATTGATTACTTTCATGAGTTAACACACGATGAAGAGTTTGATTTCGTTAAGGTTTTCGTTGATA
TCAAGAACACCTCTACAAAAAAAGTAAATGTTGCGCCGATTGCATTGATGAAAACAAATACGGGTGAAACCTTTGATTGG
AACAAAGATATTTATCTTGAAGAGTTAAACGGCGAATTGGAAGGCGGCGCCGAAAAGTCCGGAAATCTCGGCTTTATTGT
GAACGCATCAAGCGGCCATGCTCATGATAAGGCCGCGGATGCTGAGAAGAAAACAAAAGAGATCAAGTGGATCGAAATCA
CGACAAGTGACGTCTTTGACCATAACCATAAGAAAATCAGTGATGCTCAAAAAATCAAAATCAAGTTTTAA

Upstream 100 bases:

>100_bases
CTTTACAATACAACATTAAGATTAACGATAAGTAAAAGAATACAAGGTGTCCCGTTGCTTGTATGAAGTAACGGGATCTC
TTTTTAATGGAGGAATCATC

Downstream 100 bases:

>100_bases
ATCAAGAACTCCCGTACAAGGTACGGGAGTTCTTTTTCTTATTTGTTTTTTTGGCGAATCAACTCATCAATCCGCTCCAT
CACTTCTTCCATGTCCATAC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLK
DIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDW
NKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF

Sequences:

>Translated_236_residues
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLK
DIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDW
NKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF
>Mature_236_residues
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLK
DIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDW
NKDIYLEELNGELEGGAEKSGNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDHF_BACSU (O05497)

Other databases:

- EMBL:   D88802
- EMBL:   AL009126
- PIR:   B69784
- RefSeq:   NP_388454.1
- ProteinModelPortal:   O05497
- EnsemblBacteria:   EBBACT00000002261
- GeneID:   938019
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05730
- NMPDR:   fig|224308.1.peg.573
- GenoList:   BSU05730
- HOGENOM:   HBG476358
- OMA:   WIEITTS
- ProtClustDB:   CLSK2301434
- BioCyc:   BSUB:BSU05730-MONOMER
- InterPro:   IPR015250
- InterPro:   IPR012640
- InterPro:   IPR021652
- Gene3D:   G3DSA:2.60.40.1240

Pfam domain/function: PF11611 TRF2; PF08139 VirB

EC number: NA

Molecular weight: Translated: 26525; Mature: 26525

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDD
CHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
RTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELT
HHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHC
HDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDWNKDIYLEELNGELEGGAEKS
CCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF
CCEEEEEECCCCCCCCHHHCHHHHHCEEEEEEEECHHHHCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDD
CHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
RTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELT
HHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCEEEEEEEEEEEEECCCHHHHHHHHHHC
HDEEFDFVKVFVDIKNTSTKKVNVAPIALMKTNTGETFDWNKDIYLEELNGELEGGAEKS
CCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GNLGFIVNASSGHAHDKAADAEKKTKEIKWIEITTSDVFDHNHKKISDAQKIKIKF
CCEEEEEECCCCCCCCHHHCHHHHHCEEEEEEEECHHHHCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377