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The map label for this gene is yrbE [H]

Identifier: 239617377

GI number: 239617377

Start: 1042211

End: 1043248

Strand: Reverse

Name: yrbE [H]

Synonym: Kole_0987

Alternate gene names: 239617377

Gene position: 1043248-1042211 (Counterclockwise)

Preceding gene: 239617378

Following gene: 239617376

Centisome position: 45.32

GC content: 42.49

Gene sequence:

>1038_bases
ATGGCGAAGAAAAGCAAAGTGAAGATAGGGGTTATAGGTGCCGGGAGAATCGGAAAGATACATATCGAAAACCTCGTTAA
AAATGTTCCTGATGCCGAGGTTACTATCATTGCCGATCCCCTTGTAAATGAAACAAAAGAATGGGCGAAAGAGTTTGGTA
TAGAAAGAGTGGTATCCGATCCTTACGAAGTCATAGCGGATCCAGAAGTTGATGCAGTTGTTGTCTGTAGTCCAACTAAC
ACTCACGCTGATTTGATTGTTGCCACAGCAAAAGCGGGAAAAGATATCTTCTGCGAAAAACCAATTGATCTGGATCTTAA
AAAGACGATAGAAGCTTTGAGGGTCGTCGAGGAAACCGGCGTAAAACTTCAAATAGGATTCAACAGGCGCTTCGACCATA
ATTTCAGGAAAATCAAGAAACTCATCGAAGATGGAAAACTGGGAAACGTTCACATAGTGAATATAACATCCAGAGATCCC
AATCCCCCCTCGATAGACTATGTAAAGAGCTCGGGCGGCATATTCATGGATATGACTATCCACGATTTCGACATGGCCAG
ATACCTTGTAGGTAGTGAGGTAACCGAAGTTTATGCTGTTGGAGGTGTAATGGTCGATCCGAGAATCGGAGAGGCTGGAG
ACTTTGATACAGCTGCTGTAGTCCTCAAATTTGAGAATGGTGCCACATGTCTCATAGATAACAGTAGAAAAGCCGTTTAT
GGTTATGACCAGAGAGTTGAGGTTTTCGGTTCCAGAGGAAACGCAATGGCTTTAAATGACAGACCGACAAACGTTGTAGT
TAGTACTGAAGAGGGTGTTTCAAGTGACAAGCCCCTATATTTCTTCCTCGAAAGATACATGAAATCTTTCGAGGAAGAGA
TGAAGAACTTTATTGACGCTCTAACAAAGAACAAAGAATTGCCTGTCACCGGGAATGATGGACTCAAAGCTATCATCATT
GCCAAAGCAGCAACATTATCCGCTAAAGAAAAAAGACCTGTCAGGATAGAGGAAATAGAAAAAACTGCGCTGGGTTAA

Upstream 100 bases:

>100_bases
CGAAGCCGAACAGGATCCGAAGCTTGCGCCACCACTTGAATACGCAATAAAAGCCAGGAATTATCTATCCAGTGTACTGG
GATTTTAGGAGGAGAAAGAT

Downstream 100 bases:

>100_bases
GTGCTTTGGTACGACGAGATAAGCTTCGTGAATGTTGATGCTGTACTACAACTCCTATTACCACCAATTTAAGGAGGTGA
TACTTGGGGGGATCCGAACG

Product: oxidoreductase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MAKKSKVKIGVIGAGRIGKIHIENLVKNVPDAEVTIIADPLVNETKEWAKEFGIERVVSDPYEVIADPEVDAVVVCSPTN
THADLIVATAKAGKDIFCEKPIDLDLKKTIEALRVVEETGVKLQIGFNRRFDHNFRKIKKLIEDGKLGNVHIVNITSRDP
NPPSIDYVKSSGGIFMDMTIHDFDMARYLVGSEVTEVYAVGGVMVDPRIGEAGDFDTAAVVLKFENGATCLIDNSRKAVY
GYDQRVEVFGSRGNAMALNDRPTNVVVSTEEGVSSDKPLYFFLERYMKSFEEEMKNFIDALTKNKELPVTGNDGLKAIII
AKAATLSAKEKRPVRIEEIEKTALG

Sequences:

>Translated_345_residues
MAKKSKVKIGVIGAGRIGKIHIENLVKNVPDAEVTIIADPLVNETKEWAKEFGIERVVSDPYEVIADPEVDAVVVCSPTN
THADLIVATAKAGKDIFCEKPIDLDLKKTIEALRVVEETGVKLQIGFNRRFDHNFRKIKKLIEDGKLGNVHIVNITSRDP
NPPSIDYVKSSGGIFMDMTIHDFDMARYLVGSEVTEVYAVGGVMVDPRIGEAGDFDTAAVVLKFENGATCLIDNSRKAVY
GYDQRVEVFGSRGNAMALNDRPTNVVVSTEEGVSSDKPLYFFLERYMKSFEEEMKNFIDALTKNKELPVTGNDGLKAIII
AKAATLSAKEKRPVRIEEIEKTALG
>Mature_344_residues
AKKSKVKIGVIGAGRIGKIHIENLVKNVPDAEVTIIADPLVNETKEWAKEFGIERVVSDPYEVIADPEVDAVVVCSPTNT
HADLIVATAKAGKDIFCEKPIDLDLKKTIEALRVVEETGVKLQIGFNRRFDHNFRKIKKLIEDGKLGNVHIVNITSRDPN
PPSIDYVKSSGGIFMDMTIHDFDMARYLVGSEVTEVYAVGGVMVDPRIGEAGDFDTAAVVLKFENGATCLIDNSRKAVYG
YDQRVEVFGSRGNAMALNDRPTNVVVSTEEGVSSDKPLYFFLERYMKSFEEEMKNFIDALTKNKELPVTGNDGLKAIIIA
KAATLSAKEKRPVRIEEIEKTALG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=193, Percent_Identity=30.0518134715026, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787574, Length=249, Percent_Identity=22.4899598393574, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082405, Length=381, Percent_Identity=23.6220472440945, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789848, Length=155, Percent_Identity=30.9677419354839, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38020; Mature: 37889

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSKVKIGVIGAGRIGKIHIENLVKNVPDAEVTIIADPLVNETKEWAKEFGIERVVSD
CCCCCEEEEEEEECCCCCEEEHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHHHCC
PYEVIADPEVDAVVVCSPTNTHADLIVATAKAGKDIFCEKPIDLDLKKTIEALRVVEETG
CHHEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCC
VKLQIGFNRRFDHNFRKIKKLIEDGKLGNVHIVNITSRDPNPPSIDYVKSSGGIFMDMTI
CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEE
HDFDMARYLVGSEVTEVYAVGGVMVDPRIGEAGDFDTAAVVLKFENGATCLIDNSRKAVY
EHHHHHHHHHCCHHHHEEEECCEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCEEE
GYDQRVEVFGSRGNAMALNDRPTNVVVSTEEGVSSDKPLYFFLERYMKSFEEEMKNFIDA
CCCCEEEEECCCCCEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTKNKELPVTGNDGLKAIIIAKAATLSAKEKRPVRIEEIEKTALG
HHCCCCCCEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
AKKSKVKIGVIGAGRIGKIHIENLVKNVPDAEVTIIADPLVNETKEWAKEFGIERVVSD
CCCCEEEEEEEECCCCCEEEHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHHHCC
PYEVIADPEVDAVVVCSPTNTHADLIVATAKAGKDIFCEKPIDLDLKKTIEALRVVEETG
CHHEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHCC
VKLQIGFNRRFDHNFRKIKKLIEDGKLGNVHIVNITSRDPNPPSIDYVKSSGGIFMDMTI
CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEE
HDFDMARYLVGSEVTEVYAVGGVMVDPRIGEAGDFDTAAVVLKFENGATCLIDNSRKAVY
EHHHHHHHHHCCHHHHEEEECCEEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCCEEE
GYDQRVEVFGSRGNAMALNDRPTNVVVSTEEGVSSDKPLYFFLERYMKSFEEEMKNFIDA
CCCCEEEEECCCCCEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LTKNKELPVTGNDGLKAIIIAKAATLSAKEKRPVRIEEIEKTALG
HHCCCCCCEECCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]