Click here to switch to the map view.

The map label for this gene is ycjO [H]

Identifier: 239617205

GI number: 239617205

Start: 863475

End: 864365

Strand: Direct

Name: ycjO [H]

Synonym: Kole_0812

Alternate gene names: 239617205

Gene position: 863475-864365 (Clockwise)

Preceding gene: 239617204

Following gene: 239617206

Centisome position: 37.51

GC content: 41.08

Gene sequence:

>891_bases
TTGACTAACTCGCGAATGGCAACAGTGGGGACACTAAAAAAGAAGGAAAGTTCTCTCGGTTGGAAGCTGATCATGCCAAC
GATAATTCTTATAGCAGCTTTTATACTATATCCTGTCGCCTATAACATATACCTTAGCTTTTTTGATGTTTCCCTTTCCC
CAGAGAAACCGAACGAATTTGTTGGACTTAAAAATTATATCAATATCCTTTCAGATCCCGATTTCTGGAAATCTTTTTCG
ATAACTGTGTTGTTCACAATTCTAACCGTCGGTGGAAGTATAATCCTTGGAATTGTCGTGGCACTTATGATGAATAGGGA
CTTTTTTGGGCGTTCGCTGGTACGGGCATTGTTGTTGCTTCCATACATAACCCCTTTGATTGCTATCGTGTTCGCGTGGC
GATACATCTTTCTCCCAATCGACGGTCCGCTGATAAGGTTACTGGCCGGGATAGGGTTGATCGATCCGGGAGTTGATTTC
ATAAACAATCCGAACAATGCTTTCTGGGTAGTATCCATATTCAATATCTGGAGAAACTTTCCTTTTGTCTATCTTATGAT
CCTTTCACGACTGCAGTCTATCTCTTACACACTATACGAGGCCGCTGAAATAGATGGCGCAAATTCCATTCAGAAATTCA
AATACATCACATTACCGGAACTCTACTTTGTAATTGGTTCTGTCGCTCTTTTGAGAGGTATCTGGAACTTTTACAAATTC
GATGAAGTTTATTTGATGTCAAAATTCGCTGGCACGCTCCCGATATACATCTATGAGAAAGCATTTGTTGGTGTTCCGGA
ACAGGGTGTTGCTGCTGCGATTGCAACGATCTTGTTCGTTGTAATGTTCATCCTGATCGGAATATACGTAAAGAGGGTGT
TGAAATGGTAA

Upstream 100 bases:

>100_bases
AAGCTGAAGCCGAAAAGATTCTCGGGAAATAATTGAACGGCCCCATTTTTCCCGGTGGCCTCTGCAAGAGGTCACCGGGT
TTTTATGGAGGTGTAAGACT

Downstream 100 bases:

>100_bases
AGGCGAAAAATATACCCAAAAAAATTGGTTTCTATATACTGGTTATCCTGGTGGTTCTTTTTGTTGCCTATCCGTTCGCC
TGGATGATTTCCGTATCTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTNSRMATVGTLKKKESSLGWKLIMPTIILIAAFILYPVAYNIYLSFFDVSLSPEKPNEFVGLKNYINILSDPDFWKSFS
ITVLFTILTVGGSIILGIVVALMMNRDFFGRSLVRALLLLPYITPLIAIVFAWRYIFLPIDGPLIRLLAGIGLIDPGVDF
INNPNNAFWVVSIFNIWRNFPFVYLMILSRLQSISYTLYEAAEIDGANSIQKFKYITLPELYFVIGSVALLRGIWNFYKF
DEVYLMSKFAGTLPIYIYEKAFVGVPEQGVAAAIATILFVVMFILIGIYVKRVLKW

Sequences:

>Translated_296_residues
MTNSRMATVGTLKKKESSLGWKLIMPTIILIAAFILYPVAYNIYLSFFDVSLSPEKPNEFVGLKNYINILSDPDFWKSFS
ITVLFTILTVGGSIILGIVVALMMNRDFFGRSLVRALLLLPYITPLIAIVFAWRYIFLPIDGPLIRLLAGIGLIDPGVDF
INNPNNAFWVVSIFNIWRNFPFVYLMILSRLQSISYTLYEAAEIDGANSIQKFKYITLPELYFVIGSVALLRGIWNFYKF
DEVYLMSKFAGTLPIYIYEKAFVGVPEQGVAAAIATILFVVMFILIGIYVKRVLKW
>Mature_295_residues
TNSRMATVGTLKKKESSLGWKLIMPTIILIAAFILYPVAYNIYLSFFDVSLSPEKPNEFVGLKNYINILSDPDFWKSFSI
TVLFTILTVGGSIILGIVVALMMNRDFFGRSLVRALLLLPYITPLIAIVFAWRYIFLPIDGPLIRLLAGIGLIDPGVDFI
NNPNNAFWVVSIFNIWRNFPFVYLMILSRLQSISYTLYEAAEIDGANSIQKFKYITLPELYFVIGSVALLRGIWNFYKFD
EVYLMSKFAGTLPIYIYEKAFVGVPEQGVAAAIATILFVVMFILIGIYVKRVLKW

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=262, Percent_Identity=41.9847328244275, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1790465, Length=251, Percent_Identity=27.8884462151394, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789861, Length=271, Percent_Identity=25.4612546125461, Blast_Score=81, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33603; Mature: 33471

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSRMATVGTLKKKESSLGWKLIMPTIILIAAFILYPVAYNIYLSFFDVSLSPEKPNEF
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
VGLKNYINILSDPDFWKSFSITVLFTILTVGGSIILGIVVALMMNRDFFGRSLVRALLLL
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PYITPLIAIVFAWRYIFLPIDGPLIRLLAGIGLIDPGVDFINNPNNAFWVVSIFNIWRNF
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEHHHHHCCC
PFVYLMILSRLQSISYTLYEAAEIDGANSIQKFKYITLPELYFVIGSVALLRGIWNFYKF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DEVYLMSKFAGTLPIYIYEKAFVGVPEQGVAAAIATILFVVMFILIGIYVKRVLKW
HHHHHHHHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNSRMATVGTLKKKESSLGWKLIMPTIILIAAFILYPVAYNIYLSFFDVSLSPEKPNEF
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
VGLKNYINILSDPDFWKSFSITVLFTILTVGGSIILGIVVALMMNRDFFGRSLVRALLLL
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PYITPLIAIVFAWRYIFLPIDGPLIRLLAGIGLIDPGVDFINNPNNAFWVVSIFNIWRNF
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCEEEEEHHHHHCCC
PFVYLMILSRLQSISYTLYEAAEIDGANSIQKFKYITLPELYFVIGSVALLRGIWNFYKF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DEVYLMSKFAGTLPIYIYEKAFVGVPEQGVAAAIATILFVVMFILIGIYVKRVLKW
HHHHHHHHHCCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]