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The map label for this gene is rfbA [H]

Identifier: 238925113

GI number: 238925113

Start: 2641722

End: 2642504

Strand: Reverse

Name: rfbA [H]

Synonym: EUBREC_2766

Alternate gene names: 238925113

Gene position: 2642504-2641722 (Counterclockwise)

Preceding gene: 238925114

Following gene: 238925112

Centisome position: 76.6

GC content: 29.76

Gene sequence:

>783_bases
ATGTATAGAAGATCATTAAAAGAATATATAAGTGAATATAAGTTTGCATTATGGGAGCTTACAAAACGTGAGCTTAAACG
TAAATACGCCAGAAGCTATATGGGAATACTATGGAGTATTTTCTATCCTTTGTTAAGAATGATACTTGTAGTGTTTATGT
TTTCGCTTGTATTTAATAAAGGAATAGATAAATATCCGGCATATTATTTTGCTGGGTTTTTATTATTTGAATGTTTTAGT
ACAGCAACTATGACTTCATTAACATGCTTAAAAGATAATAGAGATTTTTTATTTAAGACAAAACTCCCAAGAGAGCTGTT
AGTGCTGTCAAGAGTTTTAACAGCGTTTATAAACACTATGCTTGGATTTATTCCTTTTATATTTGTGCTGATATTATATA
GAGCAAAAATTACAGTATATATTTTGTTTATTCCAGTAATATTTGTACTTTTTCTTTTATTTATTGCTGGAGCCTCGTAC
GCATTATCAATAATATACGTAGTGTTTCCGGACATAAGAGATATACATGCTCATGTGGTATTTATACTTCGATTTTTAGT
GGCAATGTTTTATTCTATCGATTGGGTGTCCGAAGGCATACAGAATTTTATAAAGCATAATCCAGTATATGCTTTTATTA
AGCTTACTCGTGATTGCATAGTTTATGGAACAAAACCAGGAAGTTTTTTTGTCGCAGAAGTTTTTATTTGGAGTTTAGGC
ATGTATTTATTTGGAAAAATACTATTTAAACTTTGCGTAAACAGGATAATGGAAAGGTTGTAA

Upstream 100 bases:

>100_bases
ATTCTTGATAACTGTTCAAAGGTTGTATGGATAGAGAAAGGAAAGCTTCAGATGGTAGGAGATCCGAAGACCGTTTGTGC
AGCATATAGGAAACAGCAAA

Downstream 100 bases:

>100_bases
TAATGAGTGAGTGTAAGAAAAATTTAAAAGATATAAGGCATAGTATTTATGTGATAAGATTACTTGCCAAAAGAGATAGG
CAAAGAGGTAATTCATCAGC

Product: putative ABC-type polysaccharide/polyol phosphate export system, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MYRRSLKEYISEYKFALWELTKRELKRKYARSYMGILWSIFYPLLRMILVVFMFSLVFNKGIDKYPAYYFAGFLLFECFS
TATMTSLTCLKDNRDFLFKTKLPRELLVLSRVLTAFINTMLGFIPFIFVLILYRAKITVYILFIPVIFVLFLLFIAGASY
ALSIIYVVFPDIRDIHAHVVFILRFLVAMFYSIDWVSEGIQNFIKHNPVYAFIKLTRDCIVYGTKPGSFFVAEVFIWSLG
MYLFGKILFKLCVNRIMERL

Sequences:

>Translated_260_residues
MYRRSLKEYISEYKFALWELTKRELKRKYARSYMGILWSIFYPLLRMILVVFMFSLVFNKGIDKYPAYYFAGFLLFECFS
TATMTSLTCLKDNRDFLFKTKLPRELLVLSRVLTAFINTMLGFIPFIFVLILYRAKITVYILFIPVIFVLFLLFIAGASY
ALSIIYVVFPDIRDIHAHVVFILRFLVAMFYSIDWVSEGIQNFIKHNPVYAFIKLTRDCIVYGTKPGSFFVAEVFIWSLG
MYLFGKILFKLCVNRIMERL
>Mature_260_residues
MYRRSLKEYISEYKFALWELTKRELKRKYARSYMGILWSIFYPLLRMILVVFMFSLVFNKGIDKYPAYYFAGFLLFECFS
TATMTSLTCLKDNRDFLFKTKLPRELLVLSRVLTAFINTMLGFIPFIFVLILYRAKITVYILFIPVIFVLFLLFIAGASY
ALSIIYVVFPDIRDIHAHVVFILRFLVAMFYSIDWVSEGIQNFIKHNPVYAFIKLTRDCIVYGTKPGSFFVAEVFIWSLG
MYLFGKILFKLCVNRIMERL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30804; Mature: 30804

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]