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The map label for this gene is rfbA [H]

Identifier: 238925112

GI number: 238925112

Start: 2640931

End: 2641719

Strand: Reverse

Name: rfbA [H]

Synonym: EUBREC_2765

Alternate gene names: 238925112

Gene position: 2641719-2640931 (Counterclockwise)

Preceding gene: 238925113

Following gene: 238925111

Centisome position: 76.58

GC content: 25.48

Gene sequence:

>789_bases
ATGAGTGAGTGTAAGAAAAATTTAAAAGATATAAGGCATAGTATTTATGTGATAAGATTACTTGCCAAAAGAGATAGGCA
AAGAGGTAATTCATCAGCATTTTTAGGTCAATTTTGGCAAATTATTAATCCGTTTATAGATTCGGTTGTAATATCATTAG
TATTTACTAAAATGTTTGATAATGGAAATTTTATATATTTTCCAATATATATTTTAATTGGAACAATGATATACGGATTG
TTTAATGAAGGCACGACAAGCTGTTTGACGTCTTTGTCTGGAAATAAAAATTTTTTGATTAAATCATCAATATCAAGGAA
TTTGTATCCTATTGAGAGAGTATATGTTGCGTTAATTAACTTTTGCTTTTCAATATTTATTTTTATCATAGTTGCATGGT
ATTATGGCCTTAATCCATCTTGGGAATGGGTATTAATAATACCTGATATAATATTATTAGCTATTATGATATTAGGAATA
GGTAAAATATTGGCAATAATTAATGTAGTATTTGCTGATATAACTTATTTTTATAGAATATTTACATTGTTTGTATTTTA
TGCGTCAGGAATTTTTTATAACACAAATAGATTATCGCCTTTGATGCAAGAATTAATTTCATTGAATCCTGTATATTTGT
CAATAGCGATAGCTAGATTAAGCGTAATCGATGGAATAATTCCCAAATGGTCATTATGGCTTAAATTATTGATTTATTCC
ATTCTACTATATAATATTGGAACATATGTGTATAATAAAAATGTTCAAAATATAATTGAAAAAATATAA

Upstream 100 bases:

>100_bases
TTTTTGTCGCAGAAGTTTTTATTTGGAGTTTAGGCATGTATTTATTTGGAAAAATACTATTTAAACTTTGCGTAAACAGG
ATAATGGAAAGGTTGTAATA

Downstream 100 bases:

>100_bases
GATAAACTTGAAGGAGAAAAAGAGATGAAGAATGAATTGAAAAAAGAAATGAGTACTCAAAATGTTAAGGTATCAATAAT
AGTGCCTATTTATAATGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSECKKNLKDIRHSIYVIRLLAKRDRQRGNSSAFLGQFWQIINPFIDSVVISLVFTKMFDNGNFIYFPIYILIGTMIYGL
FNEGTTSCLTSLSGNKNFLIKSSISRNLYPIERVYVALINFCFSIFIFIIVAWYYGLNPSWEWVLIIPDIILLAIMILGI
GKILAIINVVFADITYFYRIFTLFVFYASGIFYNTNRLSPLMQELISLNPVYLSIAIARLSVIDGIIPKWSLWLKLLIYS
ILLYNIGTYVYNKNVQNIIEKI

Sequences:

>Translated_262_residues
MSECKKNLKDIRHSIYVIRLLAKRDRQRGNSSAFLGQFWQIINPFIDSVVISLVFTKMFDNGNFIYFPIYILIGTMIYGL
FNEGTTSCLTSLSGNKNFLIKSSISRNLYPIERVYVALINFCFSIFIFIIVAWYYGLNPSWEWVLIIPDIILLAIMILGI
GKILAIINVVFADITYFYRIFTLFVFYASGIFYNTNRLSPLMQELISLNPVYLSIAIARLSVIDGIIPKWSLWLKLLIYS
ILLYNIGTYVYNKNVQNIIEKI
>Mature_261_residues
SECKKNLKDIRHSIYVIRLLAKRDRQRGNSSAFLGQFWQIINPFIDSVVISLVFTKMFDNGNFIYFPIYILIGTMIYGLF
NEGTTSCLTSLSGNKNFLIKSSISRNLYPIERVYVALINFCFSIFIFIIVAWYYGLNPSWEWVLIIPDIILLAIMILGIG
KILAIINVVFADITYFYRIFTLFVFYASGIFYNTNRLSPLMQELISLNPVYLSIAIARLSVIDGIIPKWSLWLKLLIYSI
LLYNIGTYVYNKNVQNIIEKI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30353; Mature: 30221

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSECKKNLKDIRHSIYVIRLLAKRDRQRGNSSAFLGQFWQIINPFIDSVVISLVFTKMFD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NGNFIYFPIYILIGTMIYGLFNEGTTSCLTSLSGNKNFLIKSSISRNLYPIERVYVALIN
CCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
FCFSIFIFIIVAWYYGLNPSWEWVLIIPDIILLAIMILGIGKILAIINVVFADITYFYRI
HHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTLFVFYASGIFYNTNRLSPLMQELISLNPVYLSIAIARLSVIDGIIPKWSLWLKLLIYS
HHHHHHHHHCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ILLYNIGTYVYNKNVQNIIEKI
HHHHHHHHHHHCCCHHHHHHHC
>Mature Secondary Structure 
SECKKNLKDIRHSIYVIRLLAKRDRQRGNSSAFLGQFWQIINPFIDSVVISLVFTKMFD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NGNFIYFPIYILIGTMIYGLFNEGTTSCLTSLSGNKNFLIKSSISRNLYPIERVYVALIN
CCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
FCFSIFIFIIVAWYYGLNPSWEWVLIIPDIILLAIMILGIGKILAIINVVFADITYFYRI
HHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTLFVFYASGIFYNTNRLSPLMQELISLNPVYLSIAIARLSVIDGIIPKWSLWLKLLIYS
HHHHHHHHHCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ILLYNIGTYVYNKNVQNIIEKI
HHHHHHHHHHHCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]