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The map label for this gene is gcdB [H]

Identifier: 238923991

GI number: 238923991

Start: 1519031

End: 1520101

Strand: Direct

Name: gcdB [H]

Synonym: EUBREC_1629

Alternate gene names: 238923991

Gene position: 1519031-1520101 (Clockwise)

Preceding gene: 238923990

Following gene: 238923992

Centisome position: 44.03

GC content: 44.44

Gene sequence:

>1071_bases
ATGATTGCCGTAGCATGTGTATTCCTGTTTTTGGCTATTAAAAAAGGATTTGAGCCTTTACTTTTAGTACCTATTGCTTT
TGGTATGCTCCTTGTTAATATCTATCCTGATATTATTGTAAGCCCGGAGCACTCAAGCAATGGAGTAGGTGGTTTACTTT
ATTATTTCTATACACTTGATGAGTGGTCAATTCTTCCTTCACTGATTTTCCTCGGTGTCGGAGCTATGACAGACTTTGGT
CCGCTTATCGCAAACCCTATCAGCTTCTTACTCGGAGCTGCAGCACAGTTTGGTATTTTCGGAGCTTATTTCCTTGCAAT
CCTTCTCGGATTCAATGACAAGGCAGCAGCAGCCGTATCTATCATCGGTGGAGCTGACGGACCTACATCTATTTTCCTTG
CCGGAAAATTAGGTCAGACAGGTCTGATGGGACCTATCGCCGTGGCAGCGTACTCGTACATGGCATTAGTACCTATCATC
CAGCCGCCAATTATGAAATTATTTACTACAAAGAAAGAGCGTGCGATCAAGATGCAGAACCTTCGTCCTGTAAGCAAGCT
TGAGAGAATTCTCTTCCCTGTAGTAGTTACTATCGTTGTTTGTACACTGCTTCCAACTACAGCACCACTCGTTGGTATGC
TCATGCTTGGAAATCTTTTCCGTGAGTCTGGTGTAGTACGTCAGCTTCAGGAGACAGCAAGCAACGCCCTTATGTACATT
GTAGTTATCTTACTCGGTACATCAGTAGGTGCTTCTACAAGCGCAGAGTCATTCCTTAATATGAGCACAATCAAGATCGT
TATCCTTGGTCTTATTGCATTCATGGTGGGAACTGCTGCAGGAGTACTTTTTGGAAAGCTTTTATGCTTCCTTACAAAAG
GCAAGATCAATCCACTTATCGGTTCAGCCGGTGTATCCGCTGTTCCTATGGCTGCCCGTGTATCTCAGAAGGTCGGTGCA
GAAGAGGATCCAACAAACTTCCTTCTTATGCATGCTATGGGACCTAACGTAGCCGGTGTTATTGGAACTGCCGTAGCGGC
CGGATGCTTCATGGCTATATTCGGTATTTAG

Upstream 100 bases:

>100_bases
TAATTCCAGGAGGTAAACTAATTTGAGTTACGTAGGTGAAACACTTTCAAACCTCCTACATCAGACTGCCTTTTTTAATC
TGTCAGTCGGAAACTATGTT

Downstream 100 bases:

>100_bases
ATTTAATTAAGGAGGATTAATCATGTCAGAAGTGGTAAAGAAACCATTAAAAATAACAGAAACTGTTCTTCGTGATGCAC
ATCAGTCACTGATTGCAACC

Product: sodium ion-translocating decarboxylase, beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MIAVACVFLFLAIKKGFEPLLLVPIAFGMLLVNIYPDIIVSPEHSSNGVGGLLYYFYTLDEWSILPSLIFLGVGAMTDFG
PLIANPISFLLGAAAQFGIFGAYFLAILLGFNDKAAAAVSIIGGADGPTSIFLAGKLGQTGLMGPIAVAAYSYMALVPII
QPPIMKLFTTKKERAIKMQNLRPVSKLERILFPVVVTIVVCTLLPTTAPLVGMLMLGNLFRESGVVRQLQETASNALMYI
VVILLGTSVGASTSAESFLNMSTIKIVILGLIAFMVGTAAGVLFGKLLCFLTKGKINPLIGSAGVSAVPMAARVSQKVGA
EEDPTNFLLMHAMGPNVAGVIGTAVAAGCFMAIFGI

Sequences:

>Translated_356_residues
MIAVACVFLFLAIKKGFEPLLLVPIAFGMLLVNIYPDIIVSPEHSSNGVGGLLYYFYTLDEWSILPSLIFLGVGAMTDFG
PLIANPISFLLGAAAQFGIFGAYFLAILLGFNDKAAAAVSIIGGADGPTSIFLAGKLGQTGLMGPIAVAAYSYMALVPII
QPPIMKLFTTKKERAIKMQNLRPVSKLERILFPVVVTIVVCTLLPTTAPLVGMLMLGNLFRESGVVRQLQETASNALMYI
VVILLGTSVGASTSAESFLNMSTIKIVILGLIAFMVGTAAGVLFGKLLCFLTKGKINPLIGSAGVSAVPMAARVSQKVGA
EEDPTNFLLMHAMGPNVAGVIGTAVAAGCFMAIFGI
>Mature_356_residues
MIAVACVFLFLAIKKGFEPLLLVPIAFGMLLVNIYPDIIVSPEHSSNGVGGLLYYFYTLDEWSILPSLIFLGVGAMTDFG
PLIANPISFLLGAAAQFGIFGAYFLAILLGFNDKAAAAVSIIGGADGPTSIFLAGKLGQTGLMGPIAVAAYSYMALVPII
QPPIMKLFTTKKERAIKMQNLRPVSKLERILFPVVVTIVVCTLLPTTAPLVGMLMLGNLFRESGVVRQLQETASNALMYI
VVILLGTSVGASTSAESFLNMSTIKIVILGLIAFMVGTAAGVLFGKLLCFLTKGKINPLIGSAGVSAVPMAARVSQKVGA
EEDPTNFLLMHAMGPNVAGVIGTAVAAGCFMAIFGI

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 37300; Mature: 37300

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAVACVFLFLAIKKGFEPLLLVPIAFGMLLVNIYPDIIVSPEHSSNGVGGLLYYFYTLD
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHC
EWSILPSLIFLGVGAMTDFGPLIANPISFLLGAAAQFGIFGAYFLAILLGFNDKAAAAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEE
IIGGADGPTSIFLAGKLGQTGLMGPIAVAAYSYMALVPIIQPPIMKLFTTKKERAIKMQN
EEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
LRPVSKLERILFPVVVTIVVCTLLPTTAPLVGMLMLGNLFRESGVVRQLQETASNALMYI
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVILLGTSVGASTSAESFLNMSTIKIVILGLIAFMVGTAAGVLFGKLLCFLTKGKINPLI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GSAGVSAVPMAARVSQKVGAEEDPTNFLLMHAMGPNVAGVIGTAVAAGCFMAIFGI
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIAVACVFLFLAIKKGFEPLLLVPIAFGMLLVNIYPDIIVSPEHSSNGVGGLLYYFYTLD
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHC
EWSILPSLIFLGVGAMTDFGPLIANPISFLLGAAAQFGIFGAYFLAILLGFNDKAAAAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEE
IIGGADGPTSIFLAGKLGQTGLMGPIAVAAYSYMALVPIIQPPIMKLFTTKKERAIKMQN
EEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
LRPVSKLERILFPVVVTIVVCTLLPTTAPLVGMLMLGNLFRESGVVRQLQETASNALMYI
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVILLGTSVGASTSAESFLNMSTIKIVILGLIAFMVGTAAGVLFGKLLCFLTKGKINPLI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GSAGVSAVPMAARVSQKVGAEEDPTNFLLMHAMGPNVAGVIGTAVAAGCFMAIFGI
CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]