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The map label for this gene is oppB [H]

Identifier: 238923357

GI number: 238923357

Start: 872460

End: 873503

Strand: Direct

Name: oppB [H]

Synonym: EUBREC_0977

Alternate gene names: 238923357

Gene position: 872460-873503 (Clockwise)

Preceding gene: 238923354

Following gene: 238923358

Centisome position: 25.29

GC content: 43.1

Gene sequence:

>1044_bases
GTGTGTAATGACAATGACGTCATTCGCACTTTTTTGCGTATTAGACAAAATACTTTGACGTGGTGCAGTGATAATGCTTT
AAAAAATCAAAATAATGCATTATCGATACAAATCCAAGAGGGAGAGAAAAATATGGGTAAGTACATTGTAAAGAGAGTTA
TTCTCGCTATTTTTACAATCTTCATTATCAGTCTTATTACATTCTTTGCCATGAATGCAATTCCGGGTGGTCCATTCAAT
TCGGAGAAGGCAAAGAGTCCGGCGGTAATGAAAGAGCTTGAGGCACGCTACGGACTGGATCAGCCACTTATAGTCCAGTA
CAAGAATTACATGGCAGGCGTGCTGCACGGAGATTTCGGTGTTAGTCTTAAGACAGACCGTCCGATCTCAGATATCATCG
GGGAGAGCTTCCCGATTTCAGCGAAGCTTGGACTCTTAGCGGCGCTCACTGCGATAGTATTCGGAGTGGTGCTCGGTTCG
ATAGCAGCGCTGATGCGAAACAGGTGGCCGGATCGAGTTATAGTATTCTTCGTCACACTGATTACGTCGATGCCGTCATT
TGTCATCGCTACGTTATTACTTTATTTCTTCTGTATAAAGCTTGGCGTGGTGCAGGCTTTCAGCTCAGGAAGCAACATGA
TATTACTTCCGGTGCTGTCACTGTCACTTTCACCGATGGCATATATTACAAGACTTACAAAGACTTCAATGCTTGATGCA
CTCGGACAGGATTACATCCGTACGGCAAAGGCCAAGGGTGTACATCAGTACAAGATTATATTTGTACATGCGCTTCGTAA
TGCGCTCATTCCGGTCATCACATATGTGGGACCTATGATTGGTGGTATCCTCACAGGTTCAATGGTTATTGAGAGTATTT
TCAATATCGGAGGACTCGGTTCCAAGTTCGTAAGCTGTATCACAAACCGTGATTACACAATGATTATGGCCACAACACTT
TTCCTTGCTGTCATCATGGTAGGCGCGAACCTCATTACAGATATTGTATACAAAGTGATTGATCCACGTATTAAGCTTGA
TTAA

Upstream 100 bases:

>100_bases
TAGGAAAATATATCCAATTGACAAAGCATGATTTATGTGTATAATAAAAAAGAATTGTTCGCGTCAGAACGACAGTTGTA
TCAGACAGCAAGATTAGGGA

Downstream 100 bases:

>100_bases
GGAGAGATAAAGATGAAAGATAATATGAAGAGAGCTCCTTTCTCCACACAGATTGACCTTAGCAAGTTCAATATGAAGGA
TTTTGCCAAGGCATCAGATG

Product: hypothetical protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KB [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MCNDNDVIRTFLRIRQNTLTWCSDNALKNQNNALSIQIQEGEKNMGKYIVKRVILAIFTIFIISLITFFAMNAIPGGPFN
SEKAKSPAVMKELEARYGLDQPLIVQYKNYMAGVLHGDFGVSLKTDRPISDIIGESFPISAKLGLLAALTAIVFGVVLGS
IAALMRNRWPDRVIVFFVTLITSMPSFVIATLLLYFFCIKLGVVQAFSSGSNMILLPVLSLSLSPMAYITRLTKTSMLDA
LGQDYIRTAKAKGVHQYKIIFVHALRNALIPVITYVGPMIGGILTGSMVIESIFNIGGLGSKFVSCITNRDYTMIMATTL
FLAVIMVGANLITDIVYKVIDPRIKLD

Sequences:

>Translated_347_residues
MCNDNDVIRTFLRIRQNTLTWCSDNALKNQNNALSIQIQEGEKNMGKYIVKRVILAIFTIFIISLITFFAMNAIPGGPFN
SEKAKSPAVMKELEARYGLDQPLIVQYKNYMAGVLHGDFGVSLKTDRPISDIIGESFPISAKLGLLAALTAIVFGVVLGS
IAALMRNRWPDRVIVFFVTLITSMPSFVIATLLLYFFCIKLGVVQAFSSGSNMILLPVLSLSLSPMAYITRLTKTSMLDA
LGQDYIRTAKAKGVHQYKIIFVHALRNALIPVITYVGPMIGGILTGSMVIESIFNIGGLGSKFVSCITNRDYTMIMATTL
FLAVIMVGANLITDIVYKVIDPRIKLD
>Mature_347_residues
MCNDNDVIRTFLRIRQNTLTWCSDNALKNQNNALSIQIQEGEKNMGKYIVKRVILAIFTIFIISLITFFAMNAIPGGPFN
SEKAKSPAVMKELEARYGLDQPLIVQYKNYMAGVLHGDFGVSLKTDRPISDIIGESFPISAKLGLLAALTAIVFGVVLGS
IAALMRNRWPDRVIVFFVTLITSMPSFVIATLLLYFFCIKLGVVQAFSSGSNMILLPVLSLSLSPMAYITRLTKTSMLDA
LGQDYIRTAKAKGVHQYKIIFVHALRNALIPVITYVGPMIGGILTGSMVIESIFNIGGLGSKFVSCITNRDYTMIMATTL
FLAVIMVGANLITDIVYKVIDPRIKLD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=305, Percent_Identity=41.6393442622951, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=36.1842105263158, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=32.7380952380952, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1789888, Length=307, Percent_Identity=35.8306188925081, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=30.2547770700637, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.9005524861878, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=29.4339622641509, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38211; Mature: 38211

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCNDNDVIRTFLRIRQNTLTWCSDNALKNQNNALSIQIQEGEKNMGKYIVKRVILAIFTI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
FIISLITFFAMNAIPGGPFNSEKAKSPAVMKELEARYGLDQPLIVQYKNYMAGVLHGDFG
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
VSLKTDRPISDIIGESFPISAKLGLLAALTAIVFGVVLGSIAALMRNRWPDRVIVFFVTL
CEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ITSMPSFVIATLLLYFFCIKLGVVQAFSSGSNMILLPVLSLSLSPMAYITRLTKTSMLDA
HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHH
LGQDYIRTAKAKGVHQYKIIFVHALRNALIPVITYVGPMIGGILTGSMVIESIFNIGGLG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SKFVSCITNRDYTMIMATTLFLAVIMVGANLITDIVYKVIDPRIKLD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCNDNDVIRTFLRIRQNTLTWCSDNALKNQNNALSIQIQEGEKNMGKYIVKRVILAIFTI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
FIISLITFFAMNAIPGGPFNSEKAKSPAVMKELEARYGLDQPLIVQYKNYMAGVLHGDFG
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
VSLKTDRPISDIIGESFPISAKLGLLAALTAIVFGVVLGSIAALMRNRWPDRVIVFFVTL
CEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ITSMPSFVIATLLLYFFCIKLGVVQAFSSGSNMILLPVLSLSLSPMAYITRLTKTSMLDA
HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHH
LGQDYIRTAKAKGVHQYKIIFVHALRNALIPVITYVGPMIGGILTGSMVIESIFNIGGLG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SKFVSCITNRDYTMIMATTLFLAVIMVGANLITDIVYKVIDPRIKLD
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]