Click here to switch to the map view.

The map label for this gene is 238923275

Identifier: 238923275

GI number: 238923275

Start: 788539

End: 789060

Strand: Direct

Name: 238923275

Synonym: EUBREC_0886

Alternate gene names: NA

Gene position: 788539-789060 (Clockwise)

Preceding gene: 238923274

Following gene: 238923276

Centisome position: 22.86

GC content: 38.31

Gene sequence:

>522_bases
TTGGTAACAATTGAGCGTGGTGGATCACCTAGACCGATAGATAAATTTATCACGAATGATGAAAATGGATTGAATTGGGT
TAAGATTGGTGATGCTCCAGAACAGGGAAATTATATTACTCAAACAGCAGAGAAAATTAGACCTGAAGGACTCTCTAAAA
CTAGAGAAGTTCATCCAGGAGATTTGATCTTATCAAATTCGATGAGCTTTGGAAGACCATATATAATGGCGATAGATGGC
TGTATTCATGATGGTTGGCTTGCTATTCGAGATACCAAAAAGAACTTTGATTTAAAGTTTCTTTGTACTTTACTTGGAAC
AGATGGCATGCTCAATCAATATAAGGCTATGGCGGCAGGAAGTACCGTTAATAATCTTAACAAAGAATTGGTGGGTGGCA
CTACAGTTGCATTTCCAATGGTGGAAGAGCAGATAAAGATTGGAGATTATTTTACTACCCTCGACCACCTCATCACTCTT
CACCAGCGCCAGCACAAATTACATCTGAACATGCTTTTATAA

Upstream 100 bases:

>100_bases
CAGATTTTTATAAAAAACCCAATTTCTACTTTATCTCATCGTAAGCCAATAAAAAATTATAAATGTTGAAAACGATTGGG
AACAGCGTAAGTTTTCTGAA

Downstream 100 bases:

>100_bases
ACTGTTTTTTATCGTAAGTAACATCGTATCTATACAATGGTTACCATAAATTTGACAACGAATCAAACATAAACCAACCT
CAAACAAAGCAAGCCTAATT

Product: restriction modification system DNA specificity domain protein

Products: NA

Alternate protein names: Type I Restriction- System S Subunit; Restriction System DNA Specificity Subunit; Type I Site-Specific Deoxyribonuclease Chain S; Type I R/M System Specificity Subunit; Specificity Determinant HsdS; Type I Restriction- System Specificty Subunit; Type 1 Restriction- System Specificity Subunit; Type I Restriction- System Specificity Determinant; Type I Restriction Hsds Subunit; Type I Restriction- System Specificity Subunit; Type I Restriction- System DNA Specificity Subunit; Type I Restriction; Restriction Endonuclease S Subunits-Like Protein; DNA Restriction- System Specificity Subunit; Type I Restriction Specificity Protein; Restriction System DNA Specificity Domain; Type I Site-Specific Deoxyribonuclease; Specificity Subunit

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVTIERGGSPRPIDKFITNDENGLNWVKIGDAPEQGNYITQTAEKIRPEGLSKTREVHPGDLILSNSMSFGRPYIMAIDG
CIHDGWLAIRDTKKNFDLKFLCTLLGTDGMLNQYKAMAAGSTVNNLNKELVGGTTVAFPMVEEQIKIGDYFTTLDHLITL
HQRQHKLHLNMLL

Sequences:

>Translated_173_residues
MVTIERGGSPRPIDKFITNDENGLNWVKIGDAPEQGNYITQTAEKIRPEGLSKTREVHPGDLILSNSMSFGRPYIMAIDG
CIHDGWLAIRDTKKNFDLKFLCTLLGTDGMLNQYKAMAAGSTVNNLNKELVGGTTVAFPMVEEQIKIGDYFTTLDHLITL
HQRQHKLHLNMLL
>Mature_173_residues
MVTIERGGSPRPIDKFITNDENGLNWVKIGDAPEQGNYITQTAEKIRPEGLSKTREVHPGDLILSNSMSFGRPYIMAIDG
CIHDGWLAIRDTKKNFDLKFLCTLLGTDGMLNQYKAMAAGSTVNNLNKELVGGTTVAFPMVEEQIKIGDYFTTLDHLITL
HQRQHKLHLNMLL

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19357; Mature: 19357

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTIERGGSPRPIDKFITNDENGLNWVKIGDAPEQGNYITQTAEKIRPEGLSKTREVHPG
CEEECCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
DLILSNSMSFGRPYIMAIDGCIHDGWLAIRDTKKNFDLKFLCTLLGTDGMLNQYKAMAAG
CEEEECCCCCCCCEEEEEECEECCCEEEEEECCCCCCCEEEEEHHCCCCHHHHHHHHHCC
STVNNLNKELVGGTTVAFPMVEEQIKIGDYFTTLDHLITLHQRQHKLHLNMLL
CHHHHHHHHHCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECC
>Mature Secondary Structure
MVTIERGGSPRPIDKFITNDENGLNWVKIGDAPEQGNYITQTAEKIRPEGLSKTREVHPG
CEEECCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
DLILSNSMSFGRPYIMAIDGCIHDGWLAIRDTKKNFDLKFLCTLLGTDGMLNQYKAMAAG
CEEEECCCCCCCCEEEEEECEECCCEEEEEECCCCCCCEEEEEHHCCCCHHHHHHHHHCC
STVNNLNKELVGGTTVAFPMVEEQIKIGDYFTTLDHLITLHQRQHKLHLNMLL
CHHHHHHHHHCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA