Click here to switch to the map view.

The map label for this gene is 238923276

Identifier: 238923276

GI number: 238923276

Start: 789204

End: 790130

Strand: Direct

Name: 238923276

Synonym: EUBREC_0887

Alternate gene names: NA

Gene position: 789204-790130 (Clockwise)

Preceding gene: 238923275

Following gene: 238923277

Centisome position: 22.88

GC content: 43.91

Gene sequence:

>927_bases
ATGCTAGAGGATATGAGCAAGGATGCATTATTTTACAACTATTACGCACAGTGGATAGAAGTGTATAAGAAAGATGCAAT
TCGTGAAGCCACTATGGCAAAGTACAGGATGACTCAGAAGTGGGTGGAGAAGCTGGCTCCGGAGCTTAAGGTTTGTGAGC
TGACAAGGACCGCGTATCAGAAGATACTAAATGATTACGCAAAGGAGCATGAGAGACAGACAACACTTGACTTCCATCAT
CAGCTAAAGGGTGCGGTAATGGACGCGGTGGATGAGGGGCTGATAGAGCGTGATCCGACCAGAAAGGCTATCATCAAGGG
TAAGACACCACGTGAGAAAAAGATTAAATATCTCAATCAGTTTGAGTTGCATACTTTGATAGCTGATCTGGATATAAAGG
AAGAGCCGAACTGGGACTGGTTTATTTTGCTTGTAGCAAAGACAGGGATGCGTTTTTCAGAGGCGCTTGCTATCACACCG
AAGGATTTTGATTTTGGAAGGCAAACTCTTTCTATAAGTAAGACGTGGGATTATAAGGGTAAGGGAGGTTTTCTACCGAC
GAAGAATAAGTCATCTGTGAGAAAGATTCAGATTGACTGGCAGATAGTAGTAAAGTTTTCTGAGCTGATAAAAGGGTTGC
CGGAGGACGAGCCTATATTTGTAGGAGAGGAAAAGATTTATAATTCAACCGTCAATGATGCTCTCACCAGACACTGTAAG
GCCTGTGGGATATCGGAGATTTCCATTCACGGACTTAGACATACGCATGCGTCGTTGCTTTTGTTTGCCGGTGTTTCTAT
AGCCAGTGTGGCGCGCAGATTGGGGCATGCGAGTATGACAACAACGCAGAAAACATATCTGCATATCATTCAGGAACTGG
AAAACAAGGATGTGGATCTGGTAATGAGGACTTTGTCAGGACTGTAA

Upstream 100 bases:

>100_bases
CCATAAATTTGACAACGAATCAAACATAAACCAACCTCAAACAAAGCAAGCCTAATTATGGTTACATCAGCGTAAGCAGT
ACTAATAAAGGAGGTAGCGT

Downstream 100 bases:

>100_bases
TGTAGCTTTTTAAACAATATGCTTACGCTGATTTTGATATAAGTAATTTTGTGGTATTTTATGCCTATATTTGCTATAAT
AAATATAGTTAGTGTTTAGG

Product: putative integrase/recombinase ripx

Products: NA

Alternate protein names: Phage Integrase; Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; DNA Integration/Recombination/Invertion Protein; Phage Integrase Family Protein; DNA Integration/Recombination/Inversion Protein; Prophage; Phage-Related Integrase; Site-Specific Recombinase; Prophage Lp2 Integrase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase XerD; Phage Family Integrase; Integrase/Recombinase; Tyrosine Recombinase XerC; Integrase/Recombinase Ripx; Bacteriophage-Related Integrase; Xin-Antitoxin System Toxin Component PIN Family; Integrase Protein; Prophage Lp3 Integrase; Prophage Lp4 Integrase; Phage Integrase Family Integrase/Recombinase; Tyrosine Recombinase XerD; Site-Specific Recombinase Prophage Lsa1 Integrase; Integrase Phage-Related Protein; Bacteriophage Integrase; Transcriptional Regulator XRE Family; Phage-Related Integrase Recombinase; Tyrosine Recombinase XerC-Like Protein; Integrase/Recombinase XerC

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLEDMSKDALFYNYYAQWIEVYKKDAIREATMAKYRMTQKWVEKLAPELKVCELTRTAYQKILNDYAKEHERQTTLDFHH
QLKGAVMDAVDEGLIERDPTRKAIIKGKTPREKKIKYLNQFELHTLIADLDIKEEPNWDWFILLVAKTGMRFSEALAITP
KDFDFGRQTLSISKTWDYKGKGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVGEEKIYNSTVNDALTRHCK
ACGISEISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQELENKDVDLVMRTLSGL

Sequences:

>Translated_308_residues
MLEDMSKDALFYNYYAQWIEVYKKDAIREATMAKYRMTQKWVEKLAPELKVCELTRTAYQKILNDYAKEHERQTTLDFHH
QLKGAVMDAVDEGLIERDPTRKAIIKGKTPREKKIKYLNQFELHTLIADLDIKEEPNWDWFILLVAKTGMRFSEALAITP
KDFDFGRQTLSISKTWDYKGKGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVGEEKIYNSTVNDALTRHCK
ACGISEISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQELENKDVDLVMRTLSGL
>Mature_308_residues
MLEDMSKDALFYNYYAQWIEVYKKDAIREATMAKYRMTQKWVEKLAPELKVCELTRTAYQKILNDYAKEHERQTTLDFHH
QLKGAVMDAVDEGLIERDPTRKAIIKGKTPREKKIKYLNQFELHTLIADLDIKEEPNWDWFILLVAKTGMRFSEALAITP
KDFDFGRQTLSISKTWDYKGKGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVGEEKIYNSTVNDALTRHCK
ACGISEISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQELENKDVDLVMRTLSGL

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35512; Mature: 35512

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEDMSKDALFYNYYAQWIEVYKKDAIREATMAKYRMTQKWVEKLAPELKVCELTRTAYQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KILNDYAKEHERQTTLDFHHQLKGAVMDAVDEGLIERDPTRKAIIKGKTPREKKIKYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHH
FELHTLIADLDIKEEPNWDWFILLVAKTGMRFSEALAITPKDFDFGRQTLSISKTWDYKG
HHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHEEEECCCCCCCCCCEEEEEECCCCCC
KGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVGEEKIYNSTVNDALTRHCK
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHH
ACGISEISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQELENKDVDL
HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
VMRTLSGL
HHHHHHCC
>Mature Secondary Structure
MLEDMSKDALFYNYYAQWIEVYKKDAIREATMAKYRMTQKWVEKLAPELKVCELTRTAYQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KILNDYAKEHERQTTLDFHHQLKGAVMDAVDEGLIERDPTRKAIIKGKTPREKKIKYLNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHH
FELHTLIADLDIKEEPNWDWFILLVAKTGMRFSEALAITPKDFDFGRQTLSISKTWDYKG
HHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHEEEECCCCCCCCCCEEEEEECCCCCC
KGGFLPTKNKSSVRKIQIDWQIVVKFSELIKGLPEDEPIFVGEEKIYNSTVNDALTRHCK
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHH
ACGISEISIHGLRHTHASLLLFAGVSIASVARRLGHASMTTTQKTYLHIIQELENKDVDL
HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH
VMRTLSGL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA