Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 238921952

GI number: 238921952

Start: 150085

End: 151239

Strand: Reverse

Name: cbiD [H]

Synonym: EUBELI_20186

Alternate gene names: 238921952

Gene position: 151239-150085 (Counterclockwise)

Preceding gene: 238921953

Following gene: 238921951

Centisome position: 24.13

GC content: 39.91

Gene sequence:

>1155_bases
ATGTTAGAGAGATATGTATATAAGAATCAGAAAAAAATGCGATGTGGATATACAACAGGAACATGTGCATGCGCAGCGGC
GAAAGCGGCGGCATGTATGCTTTTGTCAGGCAGGAGAATTGAAAGTGTCAGTGTGATTACTCCGATGGGAGTAGAACTTA
CGCTGCCTGTTTATGAAATAACAATGGAACAGGACAGTGTTACATGTGCTATAAAAAAAGACAGCGGGGATGATCCTGAT
GTGACTAACGGAATATTAATATATGCCAGTGTTTCTTATATAGAACGTGACAGCACAGATAAAAGAGTTGTAACAGATGG
AGGAACAGGTGTAGGAAGAATTACTAAAAAAGGGCTGTCGCGCCCGGTAGGAGAAGCGGCAATTAATCCGGTTCCGCTTA
AAATGATTGAAGAAGGTGTATCGGAAGCAGCAGAGAATTATTCTTATGAGGGAAGTTTAAAGGTTGTAATATCAGCACCA
CAGGGAGTTGAAATTGCAAAGAAAACATTTAATCCGAACCTCGGAATAACAGGGGGAATATCAATTCTTGGAACAACAGG
AATAGTAGAGCCTATGAGTGAACAGGCACTTATTGATACAATAAGGACAGAAATTAAAATGCATATAGCAGAAGGCGAAA
AAGTTCTTCTGATTGCACCGGGAAATTATGGGCAGGATTTTCTGCTTAATACTCTTGGAATTGAACTTAAAAGAAGTATC
AAATGCAGTAATTATATAGGTGATACAATAGATATGGTGTGTGATGCAGGCGCAGAAGCGATGCTTCTTGTAGGACACAT
AGGAAAACTTGTAAAACTGGGTGCAGGAATAATGAATACACATTCAAAAGCTGCAGACGGGCGTATGGAAGTCCTGGCAG
CCTGTGCCATAAGAGCAGGTGCAGAGGCTGATACTGCAAGGAAAATACTTGACTGTGTCACGACAGAGGCTGCACTTGAT
ATATTGAAAAAATCGGACATGCTTGAGAATACAATGAAGCAGCTTATGATCCGCATAGAGGATGTATTGCAAAGAAGAAG
TGGCGGTAAAATAAGAATCGGGGCAATTGTATTCTCTAATGAATATGGAATATTAGGTAAGACAAAAACAGCGGATATGC
TGTTAGAAGATATAATGGAGAATAATTATGGTTAA

Upstream 100 bases:

>100_bases
ATATAGTTGCAAGAGGCAGAAAAGGCGGAAGCAATGTTGCGGCGGCAATTATGAACGCATTGTTTTATATGGCAGCAGAT
GATGATAAAGAGTGGCGCAG

Downstream 100 bases:

>100_bases
AATTGTCGGGGCAGGACCCGGAGCTAAAGATTTAATTACAGTTCGCGGCATGCGCATGCTTAATGAGGCAGATGTGATTA
TATATGCAGGTTCACTTGTA

Product: cobalamin biosynthesis protein CbiD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MLERYVYKNQKKMRCGYTTGTCACAAAKAAACMLLSGRRIESVSVITPMGVELTLPVYEITMEQDSVTCAIKKDSGDDPD
VTNGILIYASVSYIERDSTDKRVVTDGGTGVGRITKKGLSRPVGEAAINPVPLKMIEEGVSEAAENYSYEGSLKVVISAP
QGVEIAKKTFNPNLGITGGISILGTTGIVEPMSEQALIDTIRTEIKMHIAEGEKVLLIAPGNYGQDFLLNTLGIELKRSI
KCSNYIGDTIDMVCDAGAEAMLLVGHIGKLVKLGAGIMNTHSKAADGRMEVLAACAIRAGAEADTARKILDCVTTEAALD
ILKKSDMLENTMKQLMIRIEDVLQRRSGGKIRIGAIVFSNEYGILGKTKTADMLLEDIMENNYG

Sequences:

>Translated_384_residues
MLERYVYKNQKKMRCGYTTGTCACAAAKAAACMLLSGRRIESVSVITPMGVELTLPVYEITMEQDSVTCAIKKDSGDDPD
VTNGILIYASVSYIERDSTDKRVVTDGGTGVGRITKKGLSRPVGEAAINPVPLKMIEEGVSEAAENYSYEGSLKVVISAP
QGVEIAKKTFNPNLGITGGISILGTTGIVEPMSEQALIDTIRTEIKMHIAEGEKVLLIAPGNYGQDFLLNTLGIELKRSI
KCSNYIGDTIDMVCDAGAEAMLLVGHIGKLVKLGAGIMNTHSKAADGRMEVLAACAIRAGAEADTARKILDCVTTEAALD
ILKKSDMLENTMKQLMIRIEDVLQRRSGGKIRIGAIVFSNEYGILGKTKTADMLLEDIMENNYG
>Mature_384_residues
MLERYVYKNQKKMRCGYTTGTCACAAAKAAACMLLSGRRIESVSVITPMGVELTLPVYEITMEQDSVTCAIKKDSGDDPD
VTNGILIYASVSYIERDSTDKRVVTDGGTGVGRITKKGLSRPVGEAAINPVPLKMIEEGVSEAAENYSYEGSLKVVISAP
QGVEIAKKTFNPNLGITGGISILGTTGIVEPMSEQALIDTIRTEIKMHIAEGEKVLLIAPGNYGQDFLLNTLGIELKRSI
KCSNYIGDTIDMVCDAGAEAMLLVGHIGKLVKLGAGIMNTHSKAADGRMEVLAACAIRAGAEADTARKILDCVTTEAALD
ILKKSDMLENTMKQLMIRIEDVLQRRSGGKIRIGAIVFSNEYGILGKTKTADMLLEDIMENNYG

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 41201; Mature: 41201

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERYVYKNQKKMRCGYTTGTCACAAAKAAACMLLSGRRIESVSVITPMGVELTLPVYEI
CCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEE
TMEQDSVTCAIKKDSGDDPDVTNGILIYASVSYIERDSTDKRVVTDGGTGVGRITKKGLS
EECCCCEEEEEECCCCCCCCCCCCEEEEEEEEHHCCCCCCCEEEECCCCCCHHHHHHHCC
RPVGEAAINPVPLKMIEEGVSEAAENYSYEGSLKVVISAPQGVEIAKKTFNPNLGITGGI
CCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCE
SILGTTGIVEPMSEQALIDTIRTEIKMHIAEGEKVLLIAPGNYGQDFLLNTLGIELKRSI
EEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCC
KCSNYIGDTIDMVCDAGAEAMLLVGHIGKLVKLGAGIMNTHSKAADGRMEVLAACAIRAG
CHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHCC
AEADTARKILDCVTTEAALDILKKSDMLENTMKQLMIRIEDVLQRRSGGKIRIGAIVFSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
EYGILGKTKTADMLLEDIMENNYG
CCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLERYVYKNQKKMRCGYTTGTCACAAAKAAACMLLSGRRIESVSVITPMGVELTLPVYEI
CCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEE
TMEQDSVTCAIKKDSGDDPDVTNGILIYASVSYIERDSTDKRVVTDGGTGVGRITKKGLS
EECCCCEEEEEECCCCCCCCCCCCEEEEEEEEHHCCCCCCCEEEECCCCCCHHHHHHHCC
RPVGEAAINPVPLKMIEEGVSEAAENYSYEGSLKVVISAPQGVEIAKKTFNPNLGITGGI
CCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCE
SILGTTGIVEPMSEQALIDTIRTEIKMHIAEGEKVLLIAPGNYGQDFLLNTLGIELKRSI
EEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCC
KCSNYIGDTIDMVCDAGAEAMLLVGHIGKLVKLGAGIMNTHSKAADGRMEVLAACAIRAG
CHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHCC
AEADTARKILDCVTTEAALDILKKSDMLENTMKQLMIRIEDVLQRRSGGKIRIGAIVFSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC
EYGILGKTKTADMLLEDIMENNYG
CCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA