Click here to switch to the map view.

The map label for this gene is yrfF [C]

Identifier: 238921482

GI number: 238921482

Start: 3519949

End: 3521970

Strand: Direct

Name: yrfF [C]

Synonym: NT01EI_3634

Alternate gene names: 238921482

Gene position: 3519949-3521970 (Clockwise)

Preceding gene: 238921481

Following gene: 238921483

Centisome position: 92.33

GC content: 60.78

Gene sequence:

>2022_bases
TTGTCTGCATCCTTTCCCTTTGTCAAAACCAAACAGCGTAAACTGAATCCGGAAGAGCGCCAGGCGATTGCGGCCTATCT
ACGTGGACTGGATACTGCATCAGAGAGCGCCGACCCGATGCTGACACTGCGACACCAACGTCTGATGCCGCAAGGGGATC
GGGTGTACTCCGTGACTCACGCGATCACCCGCTATGCCCTGGCAGGCGATACGCCCAGCCAACACCGCTACTTCCTGGAT
AACCAAGAAATCCATCTGCCCGCGTGCTGGGAAAAGTACATCGCCGATGAAAACAGCCTGGAGCTGATCAAAACCGCAAC
GCTGCCGCTGGTCATCACCATTAATGGCCATACGCTGGCCGAGAGCCTGCACAGCCAGCAGCTACCGACGCCGACGCTGG
GCGGGGCCGCCTCGATCCGCCGAAGCGAGGGCGATCAGGTCGATCTGTGCGGCGTACGCAGAGAAACCCTGGCCGAATAT
CAGCTGCACCAGCGCAGCGGTGCCCGCCGCGCCATCCCGACGGCGCTGGCCCTGATTCTACTCGGCGTGGCCCTGATCGT
TCCCCCGACCCTGATGCCATGGTTGCTGGCGTTGGCCACGCCGTTTCTGGGCTGGGGGCTCTGGTGCCTATACCGGAAAC
CCAGCGCCGGGCAATGCAAAGAGATCCATCTGCTGCGCGGGACCCCCAAGCGCTGGGGACTGTTTGGCGAATCCTGCGGT
GAACAGCTGAGCAACATCTCCGTCGGCACGCTGGATCTCCTGTATCCGCCCCACTGGCAGCCCTATATTCACCCGGATAT
CGGCCATCCGACCGATATCGAGATTTACCAAAACCGTCAGGTGGTGCGCCAGGGTCGCTTCCTCTCTCTCAGCGACGAGG
CTACCCAGTTTCCGCTGCAGCCGTGGGGGCGCAATGCGCTGCTGGGCGCGGCTGCGCTGATCGCGCTACTCCTTCTGCTG
ACCACTCAGTCACTGACTATCCCCCTGAAGATCAGCACCGCCTGGCTACACGGAGCCCAAACCCTCTCAGCTACCAGCGT
GAAGCAGCTGACGGAGATGCCGCTACAGGTCGGGGATATCCTGGATCTGCGCGGCAACGGAATGTGCCACGTGCCCACCT
TCTATAAAGAGGGCGAACGCTACCCCTTCATGCCCTTCGACTGCAGCGCCATTTACTGGGGCACCGCCTCGCCGATGGCG
GAGCCGAGCTCGGATACCATCGATAACGCCGCCGCACTGCAGTCTACCGTCACCCTCCAGCTAACCGTCGGCGACAGCGA
TAGCAAGGTGAGTCCGGCGCTGGCCAGTGCCATTCAGAAATCGGGGATGATCCTGCTGGATGACTTTGTCGGGATCGTCC
TCAAGACCGAGGCCCTGTGCGCTCAGAAAAACGAATGTACCCGGCTCAAGAATTCGCTGGTGAACCTGGGCAACAGTAAA
TCCTGGCCCGCGCTGCTGAAAAAAGCGCACGGCGGAGGACTGGAAGGAGTCAATGTTCTCATGCGACCGGCCAGCGCCCG
CCAGCTGACCAATATCGTCAACAGCGCGGTATCCTCATTTTATTATCGCGAAACCCATAAGGCGGCGCAGCAGCTGGCCG
TTACGCCGCCGGGGGGGGTTTTAATCAGCAGCGATGAGGGTCATCAATGGGTCGCTCACCCGCAGCCCAGCGTTTCACTG
TATGACTACAGTCCGGTCGATCAGTGGCGCGAGCTGGAAAATCTGTCGCGCCTGCTGCTGAATACCCCTTTCCGGGCCCA
CGGTGTGATCACGGAGATCAGCACGGATGCCAACGGTACGCGTCATATCATGCTGCACAGCCAGCCGGCTGGGCTAACCC
TGTGGCGCTATCTGTTAATGACGCCGCTGCTGCTGGCACTCTGCGTCACCCTGGCAGTCAACGCCACGCTGTTTGTGCGA
CGCCTGCGCGGCGCGCTGGCGCGAATCCCGGCGATCCAGCATTACTATGAGCAGTGCATCAACCATAAGATCATACCGTT
CGATCTTCCACCGCGCCCTTAA

Upstream 100 bases:

>100_bases
GAGAGTCGACGTGAATGTATCCATCGCACTCCTATATCTTATCCCCACAGCGGTTATTATCGGGTATATCTATTGGTACA
CAATGAAGAGAGCGTCGCGG

Downstream 100 bases:

>100_bases
CGTGCGGCATGACAAGGCGACGTCAGGAAAATATACTGGGCGACGCGATCACGCCCTGCATGCATTTTCCGGAGTACGCC
CATGGTTCCCATCCTCGACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 672

Protein sequence:

>673_residues
MSASFPFVKTKQRKLNPEERQAIAAYLRGLDTASESADPMLTLRHQRLMPQGDRVYSVTHAITRYALAGDTPSQHRYFLD
NQEIHLPACWEKYIADENSLELIKTATLPLVITINGHTLAESLHSQQLPTPTLGGAASIRRSEGDQVDLCGVRRETLAEY
QLHQRSGARRAIPTALALILLGVALIVPPTLMPWLLALATPFLGWGLWCLYRKPSAGQCKEIHLLRGTPKRWGLFGESCG
EQLSNISVGTLDLLYPPHWQPYIHPDIGHPTDIEIYQNRQVVRQGRFLSLSDEATQFPLQPWGRNALLGAAALIALLLLL
TTQSLTIPLKISTAWLHGAQTLSATSVKQLTEMPLQVGDILDLRGNGMCHVPTFYKEGERYPFMPFDCSAIYWGTASPMA
EPSSDTIDNAAALQSTVTLQLTVGDSDSKVSPALASAIQKSGMILLDDFVGIVLKTEALCAQKNECTRLKNSLVNLGNSK
SWPALLKKAHGGGLEGVNVLMRPASARQLTNIVNSAVSSFYYRETHKAAQQLAVTPPGGVLISSDEGHQWVAHPQPSVSL
YDYSPVDQWRELENLSRLLLNTPFRAHGVITEISTDANGTRHIMLHSQPAGLTLWRYLLMTPLLLALCVTLAVNATLFVR
RLRGALARIPAIQHYYEQCINHKIIPFDLPPRP

Sequences:

>Translated_673_residues
MSASFPFVKTKQRKLNPEERQAIAAYLRGLDTASESADPMLTLRHQRLMPQGDRVYSVTHAITRYALAGDTPSQHRYFLD
NQEIHLPACWEKYIADENSLELIKTATLPLVITINGHTLAESLHSQQLPTPTLGGAASIRRSEGDQVDLCGVRRETLAEY
QLHQRSGARRAIPTALALILLGVALIVPPTLMPWLLALATPFLGWGLWCLYRKPSAGQCKEIHLLRGTPKRWGLFGESCG
EQLSNISVGTLDLLYPPHWQPYIHPDIGHPTDIEIYQNRQVVRQGRFLSLSDEATQFPLQPWGRNALLGAAALIALLLLL
TTQSLTIPLKISTAWLHGAQTLSATSVKQLTEMPLQVGDILDLRGNGMCHVPTFYKEGERYPFMPFDCSAIYWGTASPMA
EPSSDTIDNAAALQSTVTLQLTVGDSDSKVSPALASAIQKSGMILLDDFVGIVLKTEALCAQKNECTRLKNSLVNLGNSK
SWPALLKKAHGGGLEGVNVLMRPASARQLTNIVNSAVSSFYYRETHKAAQQLAVTPPGGVLISSDEGHQWVAHPQPSVSL
YDYSPVDQWRELENLSRLLLNTPFRAHGVITEISTDANGTRHIMLHSQPAGLTLWRYLLMTPLLLALCVTLAVNATLFVR
RLRGALARIPAIQHYYEQCINHKIIPFDLPPRP
>Mature_672_residues
SASFPFVKTKQRKLNPEERQAIAAYLRGLDTASESADPMLTLRHQRLMPQGDRVYSVTHAITRYALAGDTPSQHRYFLDN
QEIHLPACWEKYIADENSLELIKTATLPLVITINGHTLAESLHSQQLPTPTLGGAASIRRSEGDQVDLCGVRRETLAEYQ
LHQRSGARRAIPTALALILLGVALIVPPTLMPWLLALATPFLGWGLWCLYRKPSAGQCKEIHLLRGTPKRWGLFGESCGE
QLSNISVGTLDLLYPPHWQPYIHPDIGHPTDIEIYQNRQVVRQGRFLSLSDEATQFPLQPWGRNALLGAAALIALLLLLT
TQSLTIPLKISTAWLHGAQTLSATSVKQLTEMPLQVGDILDLRGNGMCHVPTFYKEGERYPFMPFDCSAIYWGTASPMAE
PSSDTIDNAAALQSTVTLQLTVGDSDSKVSPALASAIQKSGMILLDDFVGIVLKTEALCAQKNECTRLKNSLVNLGNSKS
WPALLKKAHGGGLEGVNVLMRPASARQLTNIVNSAVSSFYYRETHKAAQQLAVTPPGGVLISSDEGHQWVAHPQPSVSLY
DYSPVDQWRELENLSRLLLNTPFRAHGVITEISTDANGTRHIMLHSQPAGLTLWRYLLMTPLLLALCVTLAVNATLFVRR
LRGALARIPAIQHYYEQCINHKIIPFDLPPRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the igaA family [H]

Homologues:

Organism=Escherichia coli, GI1789801, Length=673, Percent_Identity=47.3997028231798, Blast_Score=581, Evalue=1e-167,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010771
- ProDom:   PD147088 [H]

Pfam domain/function: PF07095 IgaA [H]

EC number: NA

Molecular weight: Translated: 74289; Mature: 74157

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASFPFVKTKQRKLNPEERQAIAAYLRGLDTASESADPMLTLRHQRLMPQGDRVYSVTH
CCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHCCCCCCCEEHHHH
AITRYALAGDTPSQHRYFLDNQEIHLPACWEKYIADENSLELIKTATLPLVITINGHTLA
HHHHHHHCCCCCCCCEEEECCCCEECCHHHHHHHCCCCCCEEEEECCCEEEEEECCHHHH
ESLHSQQLPTPTLGGAASIRRSEGDQVDLCGVRRETLAEYQLHQRSGARRAIPTALALIL
HHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGVALIVPPTLMPWLLALATPFLGWGLWCLYRKPSAGQCKEIHLLRGTPKRWGLFGESCG
HHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCEEEEECCCCHHHCCCHHHHH
EQLSNISVGTLDLLYPPHWQPYIHPDIGHPTDIEIYQNRQVVRQGRFLSLSDEATQFPLQ
HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCC
PWGRNALLGAAALIALLLLLTTQSLTIPLKISTAWLHGAQTLSATSVKQLTEMPLQVGDI
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCHHHCCE
LDLRGNGMCHVPTFYKEGERYPFMPFDCSAIYWGTASPMAEPSSDTIDNAAALQSTVTLQ
EEECCCCEEECCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCEEEEEE
LTVGDSDSKVSPALASAIQKSGMILLDDFVGIVLKTEALCAQKNECTRLKNSLVNLGNSK
EEECCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
SWPALLKKAHGGGLEGVNVLMRPASARQLTNIVNSAVSSFYYRETHKAAQQLAVTPPGGV
CCHHHHHHHCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCE
LISSDEGHQWVAHPQPSVSLYDYSPVDQWRELENLSRLLLNTPFRAHGVITEISTDANGT
EEECCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCC
RHIMLHSQPAGLTLWRYLLMTPLLLALCVTLAVNATLFVRRLRGALARIPAIQHYYEQCI
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NHKIIPFDLPPRP
CCCEEECCCCCCC
>Mature Secondary Structure 
SASFPFVKTKQRKLNPEERQAIAAYLRGLDTASESADPMLTLRHQRLMPQGDRVYSVTH
CCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHCCCCCCCEEHHHH
AITRYALAGDTPSQHRYFLDNQEIHLPACWEKYIADENSLELIKTATLPLVITINGHTLA
HHHHHHHCCCCCCCCEEEECCCCEECCHHHHHHHCCCCCCEEEEECCCEEEEEECCHHHH
ESLHSQQLPTPTLGGAASIRRSEGDQVDLCGVRRETLAEYQLHQRSGARRAIPTALALIL
HHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGVALIVPPTLMPWLLALATPFLGWGLWCLYRKPSAGQCKEIHLLRGTPKRWGLFGESCG
HHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCEEEEECCCCHHHCCCHHHHH
EQLSNISVGTLDLLYPPHWQPYIHPDIGHPTDIEIYQNRQVVRQGRFLSLSDEATQFPLQ
HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCC
PWGRNALLGAAALIALLLLLTTQSLTIPLKISTAWLHGAQTLSATSVKQLTEMPLQVGDI
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCHHHHHHHHHHHHHCCHHHCCE
LDLRGNGMCHVPTFYKEGERYPFMPFDCSAIYWGTASPMAEPSSDTIDNAAALQSTVTLQ
EEECCCCEEECCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCEEEEEE
LTVGDSDSKVSPALASAIQKSGMILLDDFVGIVLKTEALCAQKNECTRLKNSLVNLGNSK
EEECCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
SWPALLKKAHGGGLEGVNVLMRPASARQLTNIVNSAVSSFYYRETHKAAQQLAVTPPGGV
CCHHHHHHHCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCE
LISSDEGHQWVAHPQPSVSLYDYSPVDQWRELENLSRLLLNTPFRAHGVITEISTDANGT
EEECCCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCCCC
RHIMLHSQPAGLTLWRYLLMTPLLLALCVTLAVNATLFVRRLRGALARIPAIQHYYEQCI
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NHKIIPFDLPPRP
CCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]