| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920988
Identifier: 238920988
GI number: 238920988
Start: 3005201
End: 3006988
Strand: Reverse
Name: 238920988
Synonym: NT01EI_3118
Alternate gene names: NA
Gene position: 3006988-3005201 (Counterclockwise)
Preceding gene: 238920998
Following gene: 238920987
Centisome position: 78.88
GC content: 56.88
Gene sequence:
>1788_bases ATGCCGCCAGAAATCGAAAAACATCTGCTTGCCCTTCAGGACGAAGATCCGCGCCGTAAAGCCTGCTACCTATATTGGCA GGGCTTTCGTATCGTTCGGATCGCCGAACTGCTGGGGGTAAAAGCTACTACGCTGCATAGCTGGAAGCGGCGCGATGGCT GGGATGATTCAGCCCCGCTGGAGCGGGTGACGGCGGTGACCGAGGCGCGTCTGATCCAGCTCACGATGAAAGAGAATAAG GAGGGAAAAGACTTTAAGGAGATCGATCTGTTCTGGCGGCAGATGGAGCGCGGGGCAAGGGTTGAGCGCTATCGCCAGGG CGGCAATGAAGTCGACCTAAATCCGAATCTGGCCAAGCGTAACACCGGGCCACGTAGGTCGCCGGTTACCAACCAGATAA CAGAAGATCAGGCGGAGAAGCTGAAACAGGTGTTTCTGGAGGGATTATATCCGCACCAGAAACACTGGTATCGCGCCGGG CTGGAACACCGTATCCGCGATATCAACAAGTCGCGCCAGATTGGGGCGACGATGTTTTTCGCGCAGGAAGGGTTTGTCGA TGCGGTGGAAACGGGACGCAACCAGATTTTCCTGTCAGCCTCCAAAGCGCAGGCACACCAGTTTCGTCAGTACATTATCG ATTTTGCCCGCGATGCGGCGGATGTGGAGCTGAAGGGGGAGGTTATTCACCTGCCCCATAACGATGGACGAATGTACTTT CTCGGCACCAACGCCCGTACCGCGCAGACCTATCACGGCAACCTGTATTTGGACGAATACTTCTGGATATACCGCTTTCT GGAGCTGCGGCGTAACGCAGCAGGGATGGCCAGCCAGAAGCGCTGGCGGCAGACCTATTTTTCCACGCCCTCCAGCATTA ACCATGAGGCGTATAAATTCTGGGCGGGATTACTCTTCAATCGGGGCAGGGCGAAGAGCGAACATATTCGACTGGATCTC AGCCACCGGGCGCTGGCTGCCGGGCGGCTGTGCGAGGACGGGCAGTGGCGGCAGATTGTCACCATTGAAGATGCCATCCG GCAGGGTTATGACCTGTTCGATATTGACCAGCTCCGGCTGGAATACTCGCCGGAAGAGTTCGCTAACCTGTTTATGTGCC AGTTTATCGACGATACCGAGTCGGTATTCCCGCTCAGCCTGTTGCAGGGCTGCATGGTGGATAGCTGGGCGGTCTGGGAC GATTACAAACCGTTCGCCCTGCGTCCCCTCGGCGAACGCTCGGTATGGGTGGGCTACGACCCCGCCTTAACCGGGGACAG CGCCGGCTGCGTGGTGGTGGCTCCACCTGTAGTGGAGGGGGGTAAGTTCCGGGTGATTGAAAAGCACCAGTGGCACGGCA TGGATTTTGCGGCGCAGGCGGAGAACATTCGCAAAATTACCGGGCGCTATAACGTGACTTACATCGGCATTGATGTGACC GGTATCGGCCACGGCGTTCATCAACTGGTGAAACAGTTCTTCCCGGCAGTGCAGGCTTTCTCTTATTCCCCTGAAGTGAA ACAGCGTCTGGTACTCAAGACGCTGGATGTCGTCCGTAAACATCGGTTGGAGTTCGACGCCGGATGGACGGATTTGGCGC AGTCGTTTATGGCGATCCGCAAAACCCTGACTCCGTCCGGTCGCCAGGTAACCTTCCAGGCCAGCCGTTCGGAAGAAGTC TCCCACGCGGATCTGGCATGGGCATGTATGCACGCCATTATCAATGAACCTCTGGAAAGCTCTGGCGGCGCGAACAGCTG GCGGGGCTTAATTAAGGTGTATGGATGA
Upstream 100 bases:
>100_bases TCAGGCAACGGGCTTTGCTTGTAGTCACCGGGGTTACAAGTGGTATCGCTACGCGCGAATGGCGGCTGGTTTACGCTGAC GGCAGAAACGGGAGGACGTT
Downstream 100 bases:
>100_bases ATAACACTATCGCTTTTACATTCGGTGAACCGGAAGCCCTGTTGGACAGGCGGGAAATACTGAATTATCTGGAGTGCGTG GACTTTGGCAAATGGTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Terminase ATPase Subunit; Terminase; Phage-Related Terminase ATPase Subunit; Terminase Related Protein; Bacteriophage Terminase; Orf16-Like Phage Protein; Phage Terminase ATPase Subunit P; Mu-Like Prophage FluMu Protein Gp; Prophage; ATPase Subunit Of Terminase; Phage Gene; Terminase Subunit; Phage P2 Terminase ATPase Subunit GpP-Like Protein; Bacteriophage Terminase Large Subunit; Fels-2 Prophage Protein; Prophage Large Terminase Protein; Phage Terminase Subunit GpP; Terminase Large Subunit; DNA-Dependent ATPase Terminase Subunit; Terminase ATPase Subunit Bacteriophage Origin; Bacteriophage P2 GPP Capsid Protein; Phage Terminase Subunit; Phage-Related Terminase
Number of amino acids: Translated: 595; Mature: 594
Protein sequence:
>595_residues MPPEIEKHLLALQDEDPRRKACYLYWQGFRIVRIAELLGVKATTLHSWKRRDGWDDSAPLERVTAVTEARLIQLTMKENK EGKDFKEIDLFWRQMERGARVERYRQGGNEVDLNPNLAKRNTGPRRSPVTNQITEDQAEKLKQVFLEGLYPHQKHWYRAG LEHRIRDINKSRQIGATMFFAQEGFVDAVETGRNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDGRMYF LGTNARTAQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKFWAGLLFNRGRAKSEHIRLDL SHRALAAGRLCEDGQWRQIVTIEDAIRQGYDLFDIDQLRLEYSPEEFANLFMCQFIDDTESVFPLSLLQGCMVDSWAVWD DYKPFALRPLGERSVWVGYDPALTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVT GIGHGVHQLVKQFFPAVQAFSYSPEVKQRLVLKTLDVVRKHRLEFDAGWTDLAQSFMAIRKTLTPSGRQVTFQASRSEEV SHADLAWACMHAIINEPLESSGGANSWRGLIKVYG
Sequences:
>Translated_595_residues MPPEIEKHLLALQDEDPRRKACYLYWQGFRIVRIAELLGVKATTLHSWKRRDGWDDSAPLERVTAVTEARLIQLTMKENK EGKDFKEIDLFWRQMERGARVERYRQGGNEVDLNPNLAKRNTGPRRSPVTNQITEDQAEKLKQVFLEGLYPHQKHWYRAG LEHRIRDINKSRQIGATMFFAQEGFVDAVETGRNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDGRMYF LGTNARTAQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKFWAGLLFNRGRAKSEHIRLDL SHRALAAGRLCEDGQWRQIVTIEDAIRQGYDLFDIDQLRLEYSPEEFANLFMCQFIDDTESVFPLSLLQGCMVDSWAVWD DYKPFALRPLGERSVWVGYDPALTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVT GIGHGVHQLVKQFFPAVQAFSYSPEVKQRLVLKTLDVVRKHRLEFDAGWTDLAQSFMAIRKTLTPSGRQVTFQASRSEEV SHADLAWACMHAIINEPLESSGGANSWRGLIKVYG >Mature_594_residues PPEIEKHLLALQDEDPRRKACYLYWQGFRIVRIAELLGVKATTLHSWKRRDGWDDSAPLERVTAVTEARLIQLTMKENKE GKDFKEIDLFWRQMERGARVERYRQGGNEVDLNPNLAKRNTGPRRSPVTNQITEDQAEKLKQVFLEGLYPHQKHWYRAGL EHRIRDINKSRQIGATMFFAQEGFVDAVETGRNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDGRMYFL GTNARTAQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKFWAGLLFNRGRAKSEHIRLDLS HRALAAGRLCEDGQWRQIVTIEDAIRQGYDLFDIDQLRLEYSPEEFANLFMCQFIDDTESVFPLSLLQGCMVDSWAVWDD YKPFALRPLGERSVWVGYDPALTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVTG IGHGVHQLVKQFFPAVQAFSYSPEVKQRLVLKTLDVVRKHRLEFDAGWTDLAQSFMAIRKTLTPSGRQVTFQASRSEEVS HADLAWACMHAIINEPLESSGGANSWRGLIKVYG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68542; Mature: 68410
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPEIEKHLLALQDEDPRRKACYLYWQGFRIVRIAELLGVKATTLHSWKRRDGWDDSAPL CCCCHHHHHEECCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH ERVTAVTEARLIQLTMKENKEGKDFKEIDLFWRQMERGARVERYRQGGNEVDLNPNLAKR HHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCHHCC NTGPRRSPVTNQITEDQAEKLKQVFLEGLYPHQKHWYRAGLEHRIRDINKSRQIGATMFF CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHCCEEEE AQEGFVDAVETGRNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDGRMYF ECCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEE LGTNARTAQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKF EECCCCEEEEEECCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHH WAGLLFNRGRAKSEHIRLDLSHRALAAGRLCEDGQWRQIVTIEDAIRQGYDLFDIDQLRL HHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHE EYSPEEFANLFMCQFIDDTESVFPLSLLQGCMVDSWAVWDDYKPFALRPLGERSVWVGYD ECCHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCEECCCCCCCEEECCC PALTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVT CCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEE GIGHGVHQLVKQFFPAVQAFSYSPEVKQRLVLKTLDVVRKHRLEFDAGWTDLAQSFMAIR CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH KTLTPSGRQVTFQASRSEEVSHADLAWACMHAIINEPLESSGGANSWRGLIKVYG HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEECC >Mature Secondary Structure PPEIEKHLLALQDEDPRRKACYLYWQGFRIVRIAELLGVKATTLHSWKRRDGWDDSAPL CCCHHHHHEECCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHH ERVTAVTEARLIQLTMKENKEGKDFKEIDLFWRQMERGARVERYRQGGNEVDLNPNLAKR HHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEECCCCCHHCC NTGPRRSPVTNQITEDQAEKLKQVFLEGLYPHQKHWYRAGLEHRIRDINKSRQIGATMFF CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHCCEEEE AQEGFVDAVETGRNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDGRMYF ECCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEE LGTNARTAQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKF EECCCCEEEEEECCEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHH WAGLLFNRGRAKSEHIRLDLSHRALAAGRLCEDGQWRQIVTIEDAIRQGYDLFDIDQLRL HHHHHHCCCCCCCCEEEEEECHHHHHHCCCCCCCCCEEEEEHHHHHHCCCCCCCHHHHHE EYSPEEFANLFMCQFIDDTESVFPLSLLQGCMVDSWAVWDDYKPFALRPLGERSVWVGYD ECCHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCEEECCCCCCCEECCCCCCCEEECCC PALTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVT CCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEE GIGHGVHQLVKQFFPAVQAFSYSPEVKQRLVLKTLDVVRKHRLEFDAGWTDLAQSFMAIR CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH KTLTPSGRQVTFQASRSEEVSHADLAWACMHAIINEPLESSGGANSWRGLIKVYG HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA