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The map label for this gene is 238920987

Identifier: 238920987

GI number: 238920987

Start: 3004218

End: 3005204

Strand: Reverse

Name: 238920987

Synonym: NT01EI_3117

Alternate gene names: NA

Gene position: 3005204-3004218 (Counterclockwise)

Preceding gene: 238920988

Following gene: 238920985

Centisome position: 78.83

GC content: 57.95

Gene sequence:

>987_bases
ATGAATAACACTATCGCTTTTACATTCGGTGAACCGGAAGCCCTGTTGGACAGGCGGGAAATACTGAATTATCTGGAGTG
CGTGGACTTTGGCAAATGGTATGCGCCGCCGGTGGATTTCAACTCGCTGGCGCTGTCGTTTCGCGCTTCGGCACACCATA
CCAGCCCGATCTGCGTGAAGCGCAACGTGCTGGTTGGCACCTTCATTCCCCATCCGCTGCTGACCCGGCAGGCATTCAGC
CGCCTTGCGCTGGACTATCTGGTGTTTGGCAACGCTTATCTGGAGCGGCAGGAAAACCGGATGGGCCAGCCGTTAAAACT
GGTACCGGCGCTGGCGAAATACGTCCGGCGCGGCAAGGCGCTGGATAACTATTTCTTTGTCCAGCCAGGTCAAGTGGATC
ACGAGTTTACGCCGGGTAGCATTGGCCACCTGCTGGAGCCGGATATCAACCAGGAAATCTATGGCCTGCCGGAGTACCTG
TCCGCCCTGAATGCGGCATGGCTGGATAACGCCGCCACGCTGTTCCGCCGCCGTTACTACAAGAACGGCAGTCATGCCGG
TTTCATCCTCTACCTGAGCGATCCGGCTCATAACGAAGCAGATATCGAAGCATTGCAGGAGGCGCTGGCGGATAGCCGTG
GCCCCGGCAACTTCCGTAATCTGCTGATGTACCTGCCGAACGGTAAGCCGGACAGCGTGAAGGTGATCCCGATCGGCGAA
GTGGCGGCGAAAGATAACTTCTCCGATATCAAAAGCGTCAGCCGCGACGATCAGCTAGCCGCGCACCGGGTGCCGCCAGC
CCTGATGGGCGCAGTGCCGAGTAACGCGGGTGGCTTTGGCGATGCTATCAAAGCGGCGAAGGTATTCAACTGCAACGAGA
TCGAACCGCTGCAGGAGCGGTTCAAGGAACTTAACGACTGGCTGGGGCTGGAGGTTATTCGCTTCAGAAAGTACCGCCTT
GCCGACGACAACGCAGCGCAATCCTGA

Upstream 100 bases:

>100_bases
ACGCGGATCTGGCATGGGCATGTATGCACGCCATTATCAATGAACCTCTGGAAAGCTCTGGCGGCGCGAACAGCTGGCGG
GGCTTAATTAAGGTGTATGG

Downstream 100 bases:

>100_bases
CCTTTGCTTGCTCCCCATCAGCGCCACTGTGCGCTTCCTAGCCCGCTTCCTGCGGGCTTTTTAACGTCTTCTTACCGCCA
TAATTCCCGGTCAACACCGC

Product: phage portal protein, pbsx family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNNTIAFTFGEPEALLDRREILNYLECVDFGKWYAPPVDFNSLALSFRASAHHTSPICVKRNVLVGTFIPHPLLTRQAFS
RLALDYLVFGNAYLERQENRMGQPLKLVPALAKYVRRGKALDNYFFVQPGQVDHEFTPGSIGHLLEPDINQEIYGLPEYL
SALNAAWLDNAATLFRRRYYKNGSHAGFILYLSDPAHNEADIEALQEALADSRGPGNFRNLLMYLPNGKPDSVKVIPIGE
VAAKDNFSDIKSVSRDDQLAAHRVPPALMGAVPSNAGGFGDAIKAAKVFNCNEIEPLQERFKELNDWLGLEVIRFRKYRL
ADDNAAQS

Sequences:

>Translated_328_residues
MNNTIAFTFGEPEALLDRREILNYLECVDFGKWYAPPVDFNSLALSFRASAHHTSPICVKRNVLVGTFIPHPLLTRQAFS
RLALDYLVFGNAYLERQENRMGQPLKLVPALAKYVRRGKALDNYFFVQPGQVDHEFTPGSIGHLLEPDINQEIYGLPEYL
SALNAAWLDNAATLFRRRYYKNGSHAGFILYLSDPAHNEADIEALQEALADSRGPGNFRNLLMYLPNGKPDSVKVIPIGE
VAAKDNFSDIKSVSRDDQLAAHRVPPALMGAVPSNAGGFGDAIKAAKVFNCNEIEPLQERFKELNDWLGLEVIRFRKYRL
ADDNAAQS
>Mature_328_residues
MNNTIAFTFGEPEALLDRREILNYLECVDFGKWYAPPVDFNSLALSFRASAHHTSPICVKRNVLVGTFIPHPLLTRQAFS
RLALDYLVFGNAYLERQENRMGQPLKLVPALAKYVRRGKALDNYFFVQPGQVDHEFTPGSIGHLLEPDINQEIYGLPEYL
SALNAAWLDNAATLFRRRYYKNGSHAGFILYLSDPAHNEADIEALQEALADSRGPGNFRNLLMYLPNGKPDSVKVIPIGE
VAAKDNFSDIKSVSRDDQLAAHRVPPALMGAVPSNAGGFGDAIKAAKVFNCNEIEPLQERFKELNDWLGLEVIRFRKYRL
ADDNAAQS

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 36726; Mature: 36726

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTIAFTFGEPEALLDRREILNYLECVDFGKWYAPPVDFNSLALSFRASAHHTSPICVK
CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCCCCEEEE
RNVLVGTFIPHPLLTRQAFSRLALDYLVFGNAYLERQENRMGQPLKLVPALAKYVRRGKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
LDNYFFVQPGQVDHEFTPGSIGHLLEPDINQEIYGLPEYLSALNAAWLDNAATLFRRRYY
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KNGSHAGFILYLSDPAHNEADIEALQEALADSRGPGNFRNLLMYLPNGKPDSVKVIPIGE
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCEEEEECCH
VAAKDNFSDIKSVSRDDQLAAHRVPPALMGAVPSNAGGFGDAIKAAKVFNCNEIEPLQER
HHCCCCHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH
FKELNDWLGLEVIRFRKYRLADDNAAQS
HHHHHHHHCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNNTIAFTFGEPEALLDRREILNYLECVDFGKWYAPPVDFNSLALSFRASAHHTSPICVK
CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCCCCEEEE
RNVLVGTFIPHPLLTRQAFSRLALDYLVFGNAYLERQENRMGQPLKLVPALAKYVRRGKA
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
LDNYFFVQPGQVDHEFTPGSIGHLLEPDINQEIYGLPEYLSALNAAWLDNAATLFRRRYY
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KNGSHAGFILYLSDPAHNEADIEALQEALADSRGPGNFRNLLMYLPNGKPDSVKVIPIGE
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCCEEEEECCH
VAAKDNFSDIKSVSRDDQLAAHRVPPALMGAVPSNAGGFGDAIKAAKVFNCNEIEPLQER
HHCCCCHHHHHHCCCCHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH
FKELNDWLGLEVIRFRKYRLADDNAAQS
HHHHHHHHCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1701261 [H]