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The map label for this gene is tetD [H]

Identifier: 238920683

GI number: 238920683

Start: 2687342

End: 2687710

Strand: Direct

Name: tetD [H]

Synonym: NT01EI_2796

Alternate gene names: 238920683

Gene position: 2687342-2687710 (Clockwise)

Preceding gene: 238920682

Following gene: 238920687

Centisome position: 70.49

GC content: 55.83

Gene sequence:

>369_bases
ATGACAACCCAGGGACAACACCAGCTGTTGGTTGATGCATTAATTCAGTGGATAGAACAAAATCTGGACAAGCGTATTCT
GATCGACGATATCGCCGAACGGGCGGGTTACTCCAAATGGTATCTGCAGCGCCTGTTTAAAGAGGTCACCGGTTACAGCC
TGGCTGCCTACGTGCGCAAACGCCGTCTGATCCGGGCGGCGGCGGAGCTACAGCGCAGTAATAAGAAGATTATGGAGATC
ATGCTGCAGTACGGCTTTGATAGCCAGCAAACCTTTAGCCGGGCCTTTAAACGCCGCTACGGCACGTCCCCCGGCAGCTA
TCGCCAGCAAGCGGACGGGGATCGCTGCGTCGCGCTATCACCCGCCTGA

Upstream 100 bases:

>100_bases
TTACAAAACAACAAGAAGCCTTAGTTTTTGTATAAGTCTCTCTATTTTTGTTCCGCTACTATGGAGACAGGTACACGACG
CCTGCGATGAGGGACACCCA

Downstream 100 bases:

>100_bases
CGCCCGGGCGCCCGGGCGCCCCATCGCAGCGGGCTCCAGCGGCCCACCACCACACGTTATTTGATCTGCGCGTCCATCAC
CGTCGGCTGGGCCTGCCAGA

Product: transposon Tn10 TetD protein

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAAELQRSNKKIMEI
MLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDRCVALSPA

Sequences:

>Translated_122_residues
MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAAELQRSNKKIMEI
MLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDRCVALSPA
>Mature_121_residues
TTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAAELQRSNKKIMEIM
LQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDRCVALSPA

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=103, Percent_Identity=46.6019417475728, Blast_Score=114, Evalue=2e-27,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=45.1923076923077, Blast_Score=109, Evalue=6e-26,
Organism=Escherichia coli, GI87081928, Length=108, Percent_Identity=39.8148148148148, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 14208; Mature: 14077

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRK
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHH
RRLIRAAAELQRSNKKIMEIMLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDRCVALS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCEEECC
PA
CC
>Mature Secondary Structure 
TTQGQHQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRK
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHH
RRLIRAAAELQRSNKKIMEIMLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDRCVALS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCEEECC
PA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]