Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is 238920668

Identifier: 238920668

GI number: 238920668

Start: 2676276

End: 2677016

Strand: Direct

Name: 238920668

Synonym: NT01EI_2781

Alternate gene names: NA

Gene position: 2676276-2677016 (Clockwise)

Preceding gene: 238920665

Following gene: 238920669

Centisome position: 70.2

GC content: 53.44

Gene sequence:

>741_bases
ATGAGTGCACTGTTCTTAATGGCGCAACGCTTTCCCTTCTCCGGCAATCAGGACATTTTTGGAATGAATCCATGCGTAAC
CCGCGGCTATCGTAAAATAAGGCACTATCTACACGGGCGGCCACGCTTTCTCTTTTCCATACTGATGGCCACCGTCATCT
ATCTCTGCCTTACGCCTTTGTTCTCTCCGGCGATCCGCCTGATGTTTGGCTGGAACGTCTTCGCCTGGCTGTACATTCTC
TTTTTGCTGGCCAAAATCGTCAACCGCAAGGCCCACGATATCCGCAAAATCACCCGGCTGGAAGATGAGAGTGCCAAGAT
GGTGATCTTCTTCGTCGTCATCGGCTGCTGCATCAGCGTACTGGTGCTGTTTCTGGAGCTGGCCACCGCCGGGCAGATCA
GTGGCCATCAGAAGATCCTGCACTTCATTATCACCGGCTCTACGCTGCTCTCCTCCTGGCTGCTGCTGCCGATGGGCTTT
ACCATGCACTACGCCCACCTGTTCTATTCCAATTCCCATCAGGAGGAGCCCTGGCTGTTGTTTCCCGACAAGATCCAGGC
GCCCTCCTACTGGGACTTTATGTACTTTTCATTCACCATCGCCGTCGCCTCGCAGACCGCCGACGTCTGCGTTGGATCTC
AGGAGATGCGCAAAATTGTTCTGCTGCAGTCGGTGATCTCCTTTGTATTCAACATGGCCATCCTTGGTCTGTCGATTAAC
GTCTGTGCCAGCCTGTTCTAA

Upstream 100 bases:

>100_bases
GGTACTTACAATCGCTCCCGATATCGGGTTCGCCACCCCACTACGGCGCTGATACGCTCGATTCATCACGGCATGGCTTC
CCTGCGGCAGGATTGTTAAA

Downstream 100 bases:

>100_bases
GACGGCCCCCGGAAGCGTCGTCGCGGCGCCTCCCGGTTACTTCTGCAAGAGGCCTCACACCTCATCACGCTCTCCCGCCG
TATCTATTGTTTGTACAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYIL
FLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGF
TMHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN
VCASLF

Sequences:

>Translated_246_residues
MSALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYIL
FLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGF
TMHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN
VCASLF
>Mature_245_residues
SALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPLFSPAIRLMFGWNVFAWLYILF
LLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISVLVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGFT
MHYAHLFYSNSHQEEPWLLFPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSINV
CASLF

Specific function: Unknown

COG id: COG4291

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28176; Mature: 28045

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCC
>Mature Secondary Structure 
SALFLMAQRFPFSGNQDIFGMNPCVTRGYRKIRHYLHGRPRFLFSILMATVIYLCLTPL
CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FSPAIRLMFGWNVFAWLYILFLLAKIVNRKAHDIRKITRLEDESAKMVIFFVVIGCCISV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LVLFLELATAGQISGHQKILHFIITGSTLLSSWLLLPMGFTMHYAHLFYSNSHQEEPWLL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
FPDKIQAPSYWDFMYFSFTIAVASQTADVCVGSQEMRKIVLLQSVISFVFNMAILGLSIN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCASLF
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA