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The map label for this gene is ccmB [H]

Identifier: 238920656

GI number: 238920656

Start: 2666007

End: 2666666

Strand: Reverse

Name: ccmB [H]

Synonym: NT01EI_2768

Alternate gene names: 238920656

Gene position: 2666666-2666007 (Counterclockwise)

Preceding gene: 238920657

Following gene: 238920655

Centisome position: 69.95

GC content: 65.15

Gene sequence:

>660_bases
ATGATACTGGCGGTCATTCGGCGTGAGCTCCGCATCGCGCTGCGCAGCGGAGCGGAAATTATCAATCCGCTATGGTTTTT
TCTGATTGTGGTCACGCTGTTCCCGCTGAGCATCGGCCCGGAGCCGCAGCTGCTGGCGCGCATTGCACCGGGGATCGTCT
GGGTCGCGGCGCTGCTGGCGGCGTTGTTGTCGCTGGAGCGGCTGTTCAGGGACGATTTTCTGGACGGCTCGCTGGAGCAG
CTGGTGTTGCTCCCGGCGCCGCTGACGCTGACGGTGCTGGCCAAGGTGATCGCCCACTGGCTGCTGACCGGATTGCCGCT
GCTGATCCTGTCACCGCTGGTGGCGCTGCTGCTGTCATTTAACGCGGCGACCTGGCAGGCCGTCGCGTTGACGCTGCTGC
TCGGTACGCCGACCCTGAGCTTTATCGGGGCTATCGGGGTCGCGCTGACGGTCGGGCTGCGCAAGGGCGGGGTGCTGCTG
AGCTTGCTGGTGCTGCCGCTGTATATCCCGGTGCTGATTTTCGCCACCTCGGCCATCGATGCGGCCTCGATGGGGATGCC
CATCAGCGGCTATCTGGCGATCCTGGGGGCGATGCTGGTGGGCAGCATGACGCTGGCGCCCTTTGCCGCCGCCGCCGCGT
TACGGGTAAGTATTCAGTAG

Upstream 100 bases:

>100_bases
GCCACTGTGCGGCCGGGGGCGCTATCGTGCTGACGACCCATCAGGAGCTGAATTATCCCGCCATGCGTCGCCTGCGTCTG
CGCGGTGAGGAGAGGGCGGT

Downstream 100 bases:

>100_bases
GGTGACAGTTATAGGCCGATTCTTATATGCAGCGATAACTAAAACCATGTTGATACCAAGGCTATCTGCAGGACAAAATT
TGCGGCGTTTATTGTATATA

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MILAVIRRELRIALRSGAEIINPLWFFLIVVTLFPLSIGPEPQLLARIAPGIVWVAALLAALLSLERLFRDDFLDGSLEQ
LVLLPAPLTLTVLAKVIAHWLLTGLPLLILSPLVALLLSFNAATWQAVALTLLLGTPTLSFIGAIGVALTVGLRKGGVLL
SLLVLPLYIPVLIFATSAIDAASMGMPISGYLAILGAMLVGSMTLAPFAAAAALRVSIQ

Sequences:

>Translated_219_residues
MILAVIRRELRIALRSGAEIINPLWFFLIVVTLFPLSIGPEPQLLARIAPGIVWVAALLAALLSLERLFRDDFLDGSLEQ
LVLLPAPLTLTVLAKVIAHWLLTGLPLLILSPLVALLLSFNAATWQAVALTLLLGTPTLSFIGAIGVALTVGLRKGGVLL
SLLVLPLYIPVLIFATSAIDAASMGMPISGYLAILGAMLVGSMTLAPFAAAAALRVSIQ
>Mature_219_residues
MILAVIRRELRIALRSGAEIINPLWFFLIVVTLFPLSIGPEPQLLARIAPGIVWVAALLAALLSLERLFRDDFLDGSLEQ
LVLLPAPLTLTVLAKVIAHWLLTGLPLLILSPLVALLLSFNAATWQAVALTLLLGTPTLSFIGAIGVALTVGLRKGGVLL
SLLVLPLYIPVLIFATSAIDAASMGMPISGYLAILGAMLVGSMTLAPFAAAAALRVSIQ

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=219, Percent_Identity=74.4292237442922, Blast_Score=264, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 23099; Mature: 23099

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAVIRRELRIALRSGAEIINPLWFFLIVVTLFPLSIGPEPQLLARIAPGIVWVAALLA
CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ALLSLERLFRDDFLDGSLEQLVLLPAPLTLTVLAKVIAHWLLTGLPLLILSPLVALLLSF
HHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
NAATWQAVALTLLLGTPTLSFIGAIGVALTVGLRKGGVLLSLLVLPLYIPVLIFATSAID
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AASMGMPISGYLAILGAMLVGSMTLAPFAAAAALRVSIQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILAVIRRELRIALRSGAEIINPLWFFLIVVTLFPLSIGPEPQLLARIAPGIVWVAALLA
CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ALLSLERLFRDDFLDGSLEQLVLLPAPLTLTVLAKVIAHWLLTGLPLLILSPLVALLLSF
HHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
NAATWQAVALTLLLGTPTLSFIGAIGVALTVGLRKGGVLLSLLVLPLYIPVLIFATSAID
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AASMGMPISGYLAILGAMLVGSMTLAPFAAAAALRVSIQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]