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The map label for this gene is ccmD [H]

Identifier: 238920654

GI number: 238920654

Start: 2664849

End: 2665082

Strand: Reverse

Name: ccmD [H]

Synonym: NT01EI_2766

Alternate gene names: 238920654

Gene position: 2665082-2664849 (Counterclockwise)

Preceding gene: 238920655

Following gene: 238920653

Centisome position: 69.91

GC content: 60.26

Gene sequence:

>234_bases
ATGACACCGTTCTTTGTTTCCTGGCAGGCGTTTTTTGCGATGGGCGGCTATGCCTTCTATGTCTGGCTGTCGGTTGCACT
GACGCTGCTGCCGTTGCTGGGGGTGGTGCTGCATACCCGCCTGCGCCGACGCGCGTTGTTTGGCGAGATCCGCCGCCATC
AGGCGCGGGAACAACGGATACGCCAGGCGCAGCAGGCTATGGGTGACAATAACCGGGAGAGTGACCTCATATGA

Upstream 100 bases:

>100_bases
CGCTGATGCGCCTGCGTAACCTTATTCTGCAGCAGGAGCGGCACCGCCCCTGGGTCGCCGCATTGCTGTCGTCGTCGGTT
TCTCCAGGGAGGCGCCCGCA

Downstream 100 bases:

>100_bases
TGAATTCACGACGTAAACATCGTTTATACCTGGCCGTGGGTGTCTTGCTGGGGCTGGCCGTCACGGTATCGCTGGTGCTG
TATGCCCTGCGTGCCAACAT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MTPFFVSWQAFFAMGGYAFYVWLSVALTLLPLLGVVLHTRLRRRALFGEIRRHQAREQRIRQAQQAMGDNNRESDLI

Sequences:

>Translated_77_residues
MTPFFVSWQAFFAMGGYAFYVWLSVALTLLPLLGVVLHTRLRRRALFGEIRRHQAREQRIRQAQQAMGDNNRESDLI
>Mature_76_residues
TPFFVSWQAFFAMGGYAFYVWLSVALTLLPLLGVVLHTRLRRRALFGEIRRHQAREQRIRQAQQAMGDNNRESDLI

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=46, Percent_Identity=56.5217391304348, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 9024; Mature: 8892

Theoretical pI: Translated: 11.91; Mature: 11.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFFVSWQAFFAMGGYAFYVWLSVALTLLPLLGVVLHTRLRRRALFGEIRRHQAREQRI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQQAMGDNNRESDLI
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TPFFVSWQAFFAMGGYAFYVWLSVALTLLPLLGVVLHTRLRRRALFGEIRRHQAREQRI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQQAMGDNNRESDLI
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]