| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920631
Identifier: 238920631
GI number: 238920631
Start: 2637980
End: 2639005
Strand: Direct
Name: 238920631
Synonym: NT01EI_2743
Alternate gene names: NA
Gene position: 2637980-2639005 (Clockwise)
Preceding gene: 238920630
Following gene: 238920632
Centisome position: 69.2
GC content: 59.55
Gene sequence:
>1026_bases ATGAGCGCCCCCCAGAACCGACAGTCCGTGCTGGAGCAGCTGTATGCCCGGCCCTATGACTTCGATTTTTTTCAGGCCGT CAGGATACTGGAGCTGCAGCAGTTAAGGTGTGGCTGCCAGGAGCTTCCGCTGCGCTTCCGTACCCATCTCTCCCTGGCTA CCCCGGCCAGCAGTATTTATGCGCTGCAGCCCCCCGTAGCAGATCAGCCGCAGGTCATGACCATCAACTTCATGGGACTG ACCGGCCCCTCTGGGGCATTACCGACACGGTATACCGAGATGCTGCTGGAGCGACGCCTGCAGCATCGGGATCAGACCGC TCACCATTTTTTTGATCTGCTCAACCACCGTCTGATCACTCTGTTTTACCAGGCGTGGCGCAAACATCAGGCGACGGCTG ATCTGGCCTGTGGCCTGCAGGCCGATTGGCGTCAGATGCTGCTCTCCCTGGCCGGTCTGGGCACGCCGGGACTACAAAAC CGGCTGATAAAAGATGGTGTCAATGATGATGTCTTTGCCTATTACGCCGGGCGGTTCGGCGCACGCTCGCTCAGCGAGGA GGGACTGCGCACACTGCTGACAGAGTATTTTTCCGTACCGGTTGAGATCCAGCCCTTTCAGGGACAGTGGCTGAAGCTGG ATGAGTCGGATGTCCTGGCTCTGGGGCGTCAGAACTGCACTCTGGGAGAGTGGCCGGTACTGGGCCGGCAGGTATGGGAT GCCCAAAGCCAGTTTAGGATCCGCCTCGGGCCGATGAACTATAAGCAGTTTCAGGCATTTTTACCGGGGGGAAAGGACTT TCGGGCACTGACCAAGTTGGTCCGTTTTTCCATTGAAATCGCCGTAACGTTCGATATTCAGCTGGTACTGGACGCCCGTG AGGTACCGCCCTGCACACTGGGTGATAGCCAGGCCGGAGCGGCCCGCCCCGGATGGATTGGCTGGCTGGGAGAGCGCCCC TCCAGACTGGGCGATGCCGACGACGTGGTATTACAGGAGCCGAGGGACAGGCTGCACGCGCGATAA
Upstream 100 bases:
>100_bases ATAGCGCCATCAACAGTTTTACCCGCCTGCATGTACGCACCCAGCAGCGGGAACAAGCGCTCAAGCGCTGGCCGCCGCGG GCGGGTAAGGCGGTGCTGTC
Downstream 100 bases:
>100_bases ATCGGGTGCACAGGCAAGACGCCCGGCGCCCACCGCTTATTCAGGCTGAAAGCGACCTACCACGCGATGTGACTTACATT CATTAACGGGGAAACCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: Type VI Secretion Protein Family; Quinoprotein Dehydrogenase; Conserved Protein; Cytoplasmic Protein; Type VI Secretion System Protein ImpH; T6ss R; Replication/Virulence Associated Protein; Type VI Secretion System Protein; Type VI Secretion Protein VasG; Type VI Secretion System Core Protein; Type VI Secretion System Protein EvpG; Protein ImpH; Secreted Protein; Cytoplasmic Protein SciB
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGL TGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQN RLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERP SRLGDADDVVLQEPRDRLHAR
Sequences:
>Translated_341_residues MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGL TGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQN RLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERP SRLGDADDVVLQEPRDRLHAR >Mature_340_residues SAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGLT GPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNR LIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWDA QSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERPS RLGDADDVVLQEPRDRLHAR
Specific function: Unknown
COG id: COG3520
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38741; Mature: 38610
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIY CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHEEECCCCCCEE ALQPPVADQPQVMTINFMGLTGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLIT EECCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNRLIKDGVNDDVFAYYAGRFG HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEHHCCCC ARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD CHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHHC AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTL CCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCCCC GDSQAGAARPGWIGWLGERPSRLGDADDVVLQEPRDRLHAR CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHCCCHHHCCCC >Mature Secondary Structure SAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIY CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHEEECCCCCCEE ALQPPVADQPQVMTINFMGLTGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLIT EECCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNRLIKDGVNDDVFAYYAGRFG HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEHHCCCC ARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD CHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHHHHC AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTL CCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCCCC GDSQAGAARPGWIGWLGERPSRLGDADDVVLQEPRDRLHAR CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA