| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920626
Identifier: 238920626
GI number: 238920626
Start: 2632264
End: 2633751
Strand: Direct
Name: 238920626
Synonym: NT01EI_2738
Alternate gene names: NA
Gene position: 2632264-2633751 (Clockwise)
Preceding gene: 238920625
Following gene: 238920627
Centisome position: 69.05
GC content: 55.78
Gene sequence:
>1488_bases ATGAGCGAACAGAACTTGCCAGAAAGTGCCGCTGTCGAGAGCGCGGCTCCAGAGGACAGCCTGCTGGATAGCATCATTGC TGAAACCCGGATGGCACGCAGTGACCTGGAGAGAGAGCGGGCGCGGGACCTGTTGGGGGAATGGGTAAGTGAGGTTCTGT CGGGAACGGTGACAGTTTCCGGTGACGTACTGGCCAGTATTGAGGCACGTATTGCCCAGATCGATGCGCTGCTCTCCGCC CAGCTGTCCACCATTATGCATGAGCCGGCTTTCCAAAAGCTGGAAGGGTCATGGCGTGGACTGCATTACCTGGTACATCA AAGCGAAACCGGTACCGGCCTGAAAATCCGCATGCTGAATGTCAGCCGAAAAGATCTGATCCGCGACTTTAAGAGTGCCG CCGAGTTTGATCAGAGCGCCCTGTTCAAGAAAGTCTATGAGGAGGAGTACGGCACCTTTGGTGGTGCCCCCTTTGCAGCC ATGATCGGGGATTATGAGTTCAGCAACCACCCGGAGGATCTGTTTCTGCTGGAGGAGATCTCACACGTTGCGGCGGCAGC CCATGCTCCCTTCCTCTCTGCCGCCAGCGCAGGAATGTTCGGACTGGATAGCCTGACAGAGCTGTCGATCCCCAGGGATC TGGCCAAAGGCTTTGATACGGTTGAGTATGCCAAGTGGAAATCGCTGCGCCAGTCGGAGGATGCCCGCTATATCGCCCTG GCCCTGCCCCACGTGCTTGGCCGACTGCCTTACGGTGCCGCGACGGTACCGGTAGAGGCATTCAATTTTGAGGAAGATGT CAACGGCAAGGAGCATGGCAAATATCTGTGGCTGAATGCGGCCTATGCGCTGGGTACCCGCCTGACTCAGGCCTATGCCA AATATGGCTGGTGCGCCGCCATCCGGGGAGTCGAAGGAGGTGGTCTGGTGGAGGGACTGCCGGCGCACACCTTTACTACC GATGATGGCGAAGTAGAGCTCAAGTGTCCCACCGAAGTGGCCATTACCGATCGCCGGGAGAAAGAGTTGGCCGACCTGGG ATTTATCGCCCTGACCCACTGTAAGGGTACCGACTATGCCGCATTCTTTTCGACCCAGTCGGCACAAAAGCCCAAGGAAT ATGACAGTGACTCAGCTAATGCCAACGCCAGGATCGCCTGCCAGCTGCAATATATTATGGCCACCTCGCGCTTTGCCCAT TATTTAAAATCGATGGTCCGCGACAAGCTCGGCAGCTTTATGAGCCGTAGCGAATGTGAATACTTTCTCAATCAGTGGAT CAGTAATTATGTGGTCGGTTCAGATGATGCAGGCCAGGATATTAAGGCGAAATACCCATTACGGGAAGCCCGTATTGATG TCAGCGATATTCCAGGTAAACCGGGGTTCTATAAGGCAGTGGCCTATTTAAAACCCCATTTCCAGCTGGAGGGGCTGACC GCATCTTTACGTTTGGTCGCCGATCTGCCGCCACCGGCGCAAGGCTAA
Upstream 100 bases:
>100_bases GCAACGAGCGCCTGGGTGAGGTATTGCAGGGCATCATTGAAGATACCGAAAAACTGCAAAATCTGGGTAAAGAGACCGGT TTTAGTGAGGAACAGCAATA
Downstream 100 bases:
>100_bases CTATTTAGCCGAATTTATCTATCACATATATCTAAAACACAGTTTATCTTGTCACAAGAGAGGTCCGCTATGGCTTTTGA TACCTATATCAAACTAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MSEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSA QLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAA MIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL ALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGVEGGGLVEGLPAHTFTT DDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYAAFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAH YLKSMVRDKLGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT ASLRLVADLPPPAQG
Sequences:
>Translated_495_residues MSEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSA QLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAA MIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL ALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGVEGGGLVEGLPAHTFTT DDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYAAFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAH YLKSMVRDKLGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT ASLRLVADLPPPAQG >Mature_494_residues SEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSAQ LSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAAM IGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIALA LPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGVEGGGLVEGLPAHTFTTD DGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYAAFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAHY LKSMVRDKLGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLTA SLRLVADLPPPAQG
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54458; Mature: 54327
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVS CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC GDVLASIEARIAQIDALLSAQLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLN CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEC VSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAAMIGDYEFSNHPEDLFLLEEI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH SHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL HHHHHHHHCCHHHHHCCCCCCCCHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHH ALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAA HHHHHHHCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IRGVEGGGLVEGLPAHTFTTDDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYA HCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEECCCHHHHHHHHCCEEEEECCCCCCE AFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAHYLKSMVRDKLGSFMSRSECE EEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCHHHHHHHHCCCEEECCCE ASLRLVADLPPPAQG EEEEEEECCCCCCCC >Mature Secondary Structure SEQNLPESAAVESAAPEDSLLDSIIAETRMARSDLERERARDLLGEWVSEVLSGTVTVS CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC GDVLASIEARIAQIDALLSAQLSTIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLN CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEC VSRKDLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAAMIGDYEFSNHPEDLFLLEEI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH SHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL HHHHHHHHCCHHHHHCCCCCCCCHHHHHCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHH ALPHVLGRLPYGAATVPVEAFNFEEDVNGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAA HHHHHHHCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IRGVEGGGLVEGLPAHTFTTDDGEVELKCPTEVAITDRREKELADLGFIALTHCKGTDYA HCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEECCCHHHHHHHHCCEEEEECCCCCCE AFFSTQSAQKPKEYDSDSANANARIACQLQYIMATSRFAHYLKSMVRDKLGSFMSRSECE EEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCHHHHHHHHCCCEEECCCE ASLRLVADLPPPAQG EEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA