| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is menC
Identifier: 238920535
GI number: 238920535
Start: 2541362
End: 2542333
Strand: Reverse
Name: menC
Synonym: NT01EI_2647
Alternate gene names: 238920535
Gene position: 2542333-2541362 (Counterclockwise)
Preceding gene: 238920536
Following gene: 238920534
Centisome position: 66.69
GC content: 65.84
Gene sequence:
>972_bases ATGCGTCAGGCCACGTTGTATCGCTATCGTCTGCCGGTGGACGCCGGTGTCGCGCTGCGTAACCAGCGGCTGAAAAGCCG CGATGGGCTACTGGTGCGGCTGCACGAGGACGGACGCGAAGGGTGGGGCGAGATAGCCCCGTTACCGGAGTTTAGCCATG AAACGCTGCCTGAAGCTCAGGAGGCCGCGTGCCGCCTGTTGGCGCAGTGGCAGGTGGGCGCGGCGCCGGCGGAGAGCCCG CTGCCATCGGTTGCCTTTGGCCTGAGTTGTGCGCAGGCGGAGCTTTCCGGTACGCTGCCGCAGGCAGCCAACTACCGATC GGCGACGCTGTGCAACGGCGATCCCGATGCGCTGTTTCAGGTGCTGCAGTCGATCCCCGGCGAGAAAGTGGCCAAGGTGA AGGTCGGGCTGTATGAGGCGGTGCGCGACGGAATGATCGTCAATCTACTGCTGGAGGCGCTGCCGGATCTGCATCTGCGT CTGGATGCCAACCGTAGCTGGACCCGGGCCAAGGCGGATGGTTTTGCCAAGTATGTCAATCCGGACTGGCGCGACCGTAT TCTGTTTCTGGAAGAGCCGTGCAAGACCCGCGATGAGTCGCGCGCCTTTGCCCGCGACACCGGGATCGCCATCGCCTGGG ATGAGAGCGTGCGCGATGCGGACTTCCGCGTCGAGGCGGAGCCGGGCGTGGCGGCCATCATCATCAAGCCGACCCTGACC GGCAGCCTGCAGCGCTGTCGGCAGCTGGTGACACAGGCGCACCAGGCGGGTTTGAGTGCAGTGATCAGCTCCAGTATTGA ATCCAGCCTGGGGCTGAGTCAGCTGGCGCGCATGGCGGCCTGGCTGACGCCGGGCACGCCGCCGGGTCTGGATACCCTGA TGCTGATGCAGGCGCAGCTGCTGCGGGCATGGCCGGCGTGTACGCTGCCGCTGTGGGGTGAGGATACGCTGGACGTGGTA TGGCAGGGGTGA
Upstream 100 bases:
>100_bases CCACCATGCTGTTCTACATGACGGAAGAGGGGCAGGAAGGGCGCAACGCATTTAACGAAAAGCGTCAGCCGGACTTTTCC AAGTTTAAGCGGAATCCGTA
Downstream 100 bases:
>100_bases GGTGCTTTGACGACTGGCCCTGGCGTCACTGGGCGCATCAGCGTCCGGCCGATATCGCGCTGCGCAGCGACGGCGAGGAG ATTGACTGGCAGACGCTGGC
Product: O-succinylbenzoate synthase
Products: NA
Alternate protein names: OSB synthase; OSBS; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase; o-succinylbenzoic acid synthase
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MRQATLYRYRLPVDAGVALRNQRLKSRDGLLVRLHEDGREGWGEIAPLPEFSHETLPEAQEAACRLLAQWQVGAAPAESP LPSVAFGLSCAQAELSGTLPQAANYRSATLCNGDPDALFQVLQSIPGEKVAKVKVGLYEAVRDGMIVNLLLEALPDLHLR LDANRSWTRAKADGFAKYVNPDWRDRILFLEEPCKTRDESRAFARDTGIAIAWDESVRDADFRVEAEPGVAAIIIKPTLT GSLQRCRQLVTQAHQAGLSAVISSSIESSLGLSQLARMAAWLTPGTPPGLDTLMLMQAQLLRAWPACTLPLWGEDTLDVV WQG
Sequences:
>Translated_323_residues MRQATLYRYRLPVDAGVALRNQRLKSRDGLLVRLHEDGREGWGEIAPLPEFSHETLPEAQEAACRLLAQWQVGAAPAESP LPSVAFGLSCAQAELSGTLPQAANYRSATLCNGDPDALFQVLQSIPGEKVAKVKVGLYEAVRDGMIVNLLLEALPDLHLR LDANRSWTRAKADGFAKYVNPDWRDRILFLEEPCKTRDESRAFARDTGIAIAWDESVRDADFRVEAEPGVAAIIIKPTLT GSLQRCRQLVTQAHQAGLSAVISSSIESSLGLSQLARMAAWLTPGTPPGLDTLMLMQAQLLRAWPACTLPLWGEDTLDVV WQG >Mature_323_residues MRQATLYRYRLPVDAGVALRNQRLKSRDGLLVRLHEDGREGWGEIAPLPEFSHETLPEAQEAACRLLAQWQVGAAPAESP LPSVAFGLSCAQAELSGTLPQAANYRSATLCNGDPDALFQVLQSIPGEKVAKVKVGLYEAVRDGMIVNLLLEALPDLHLR LDANRSWTRAKADGFAKYVNPDWRDRILFLEEPCKTRDESRAFARDTGIAIAWDESVRDADFRVEAEPGVAAIIIKPTLT GSLQRCRQLVTQAHQAGLSAVISSSIESSLGLSQLARMAAWLTPGTPPGLDTLMLMQAQLLRAWPACTLPLWGEDTLDVV WQG
Specific function: Converts SHCHC to OSB
COG id: COG1441
COG function: function code H; O-succinylbenzoate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily
Homologues:
Organism=Escherichia coli, GI1788596, Length=319, Percent_Identity=68.6520376175549, Blast_Score=426, Evalue=1e-121,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MENC_EDWI9 (C5B7H9)
Other databases:
- EMBL: CP001600 - RefSeq: YP_002934050.1 - ProteinModelPortal: C5B7H9 - GeneID: 7961673 - GenomeReviews: CP001600_GR - KEGG: eic:NT01EI_2647 - OMA: YEANRDG - ProtClustDB: PRK05105 - HAMAP: MF_00470 - InterPro: IPR013342 - InterPro: IPR010196 - SMART: SM00922 - TIGRFAMs: TIGR01927
Pfam domain/function: PF01188 MR_MLE
EC number: =4.2.1.113
Molecular weight: Translated: 35387; Mature: 35387
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: ACT_SITE 134-134 ACT_SITE 236-236
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQATLYRYRLPVDAGVALRNQRLKSRDGLLVRLHEDGREGWGEIAPLPEFSHETLPEAQ CCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH EAACRLLAQWQVGAAPAESPLPSVAFGLSCAQAELSGTLPQAANYRSATLCNGDPDALFQ HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHH VLQSIPGEKVAKVKVGLYEAVRDGMIVNLLLEALPDLHLRLDANRSWTRAKADGFAKYVN HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHHCCHHHHCC PDWRDRILFLEEPCKTRDESRAFARDTGIAIAWDESVRDADFRVEAEPGVAAIIIKPTLT CCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCC GSLQRCRQLVTQAHQAGLSAVISSSIESSLGLSQLARMAAWLTPGTPPGLDTLMLMQAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH LRAWPACTLPLWGEDTLDVVWQG HHHCCCCCCCCCCCCCEEEEECC >Mature Secondary Structure MRQATLYRYRLPVDAGVALRNQRLKSRDGLLVRLHEDGREGWGEIAPLPEFSHETLPEAQ CCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH EAACRLLAQWQVGAAPAESPLPSVAFGLSCAQAELSGTLPQAANYRSATLCNGDPDALFQ HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHH VLQSIPGEKVAKVKVGLYEAVRDGMIVNLLLEALPDLHLRLDANRSWTRAKADGFAKYVN HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHHHCCHHHHCC PDWRDRILFLEEPCKTRDESRAFARDTGIAIAWDESVRDADFRVEAEPGVAAIIIKPTLT CCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCEEEEEECCCCC GSLQRCRQLVTQAHQAGLSAVISSSIESSLGLSQLARMAAWLTPGTPPGLDTLMLMQAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH LRAWPACTLPLWGEDTLDVVWQG HHHCCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA