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The map label for this gene is yciM [H]

Identifier: 238920241

GI number: 238920241

Start: 2244873

End: 2246042

Strand: Reverse

Name: yciM [H]

Synonym: NT01EI_2350

Alternate gene names: 238920241

Gene position: 2246042-2244873 (Counterclockwise)

Preceding gene: 238920242

Following gene: 238920240

Centisome position: 58.92

GC content: 59.66

Gene sequence:

>1170_bases
ATGCTTGAGCTGCTGTTTCTGCTTCTCCCGGTAGCGGCTGCCTATGGCTGGTATATGGGGCGAAGGAGCGCACAGCAGGA
TAAACAGCAGGAGGCTAACCGCCTGTCACGGGAGTACGTGACCGGGGTGAACTTTCTGCTGTCTAACCAGCAGGATAAAG
CGGTTGAGCTGTTCTTGGACATGCTCAAGGAGGACAGCAACACCGTTGAGGCTCACCTGACGCTCGGTAACCTGTTTCGT
TCCCGCGGCGAGGTCGATCGTGCCATTCGCATTCACCAATCCCTGATGGAAAGTGCCTCGCTCTCCTTTGAGCAGCGTCT
GCTGGCCGTACAGCAGCTGGGGCGCGACTATATGGCGGCGGGGTTGTATGACCGGGCTGAGGAGATGTTCAGCCAGCTGA
TTGATGAGGCAGATTTCAAAGTATTTGCCCTGCAGCAGCTGCTGTTGATCCATCAGGCGACCAGCGATTGGCACAAAGCC
ATCGATGTGGCCGAAAAGCTGGTGCGGCTGGGCAAAGATCAGCAGCGCAGCGAAATCGCGCATTTCTACTGTGAGCTGGC
GTTACAGGCGATGGGCAGCGACGATCTCGATAGGGCGCAGAGCCTGCTGAAGAAAGCCACAGCGGCAGATAAGGGCTGCG
CCCGCGTCTCGATGATGCGCGGACGGGTATTTCAGGCGCTGGGTGAACCGGCCAAGGCGGTTACCGCCTTTTCCCTGGTG
CTGGAGCAGGATAAGGCATTTGTCAGCGAGGTGTTGCCGCTGATGGAGGCGTGCTACCAGGTGCTGGAGCAGCCAGCGCC
CTGGCATGATTTTTTGCGCCGCTGTGTTGATGAGGACGCTGGCGCCAGTGCAGAGCTGATGCTGGGACAGGTTATCGAGG
CGCAAGAGGGGCTGGAGGCGGCGCAGGTATATGTCAGCCGTCAGCTGCAGCGCCACCCGACGATGCGCGCATTCCATCGT
CTGATAGACTACCAGCTGGCCGAGGCAGAGGATGGACGCGCCCGCGAAAGTCTGCAGCTGCTGCGTGATATGGTTGGCGA
GCAGATCCGCGCCAAGCCTCGCTATCGCTGCCTGAAGTGTGGGTTTACGCCGCACAGTCTGTACTGGCATTGCCCCTCCT
GCCGGGCCTGGGCGACCATTAAGCCGATCCGTGGTCTGGATGGTCAATAG

Upstream 100 bases:

>100_bases
CGCGGGCGCAGCGTAAAATTCGCCGGTTGGAACAGCAGCTGACGTCGGCGCCGCCGCAGGGCAGCAGCACCGCGGCTCCG
GCTGCGAAGGAATAACCGCT

Downstream 100 bases:

>100_bases
GCGTGATTTTACTGCGCGTCGTACCTACGCCCTAGGCAGAGCGGGGCGTGCTGTGTACAATGCCGCTCCTGAAAAAGGTA
TTTCTCCGCTAACGCCAGAT

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQDKQQEANRLSREYVTGVNFLLSNQQDKAVELFLDMLKEDSNTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLSFEQRLLAVQQLGRDYMAAGLYDRAEEMFSQLIDEADFKVFALQQLLLIHQATSDWHKA
IDVAEKLVRLGKDQQRSEIAHFYCELALQAMGSDDLDRAQSLLKKATAADKGCARVSMMRGRVFQALGEPAKAVTAFSLV
LEQDKAFVSEVLPLMEACYQVLEQPAPWHDFLRRCVDEDAGASAELMLGQVIEAQEGLEAAQVYVSRQLQRHPTMRAFHR
LIDYQLAEAEDGRARESLQLLRDMVGEQIRAKPRYRCLKCGFTPHSLYWHCPSCRAWATIKPIRGLDGQ

Sequences:

>Translated_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQDKQQEANRLSREYVTGVNFLLSNQQDKAVELFLDMLKEDSNTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLSFEQRLLAVQQLGRDYMAAGLYDRAEEMFSQLIDEADFKVFALQQLLLIHQATSDWHKA
IDVAEKLVRLGKDQQRSEIAHFYCELALQAMGSDDLDRAQSLLKKATAADKGCARVSMMRGRVFQALGEPAKAVTAFSLV
LEQDKAFVSEVLPLMEACYQVLEQPAPWHDFLRRCVDEDAGASAELMLGQVIEAQEGLEAAQVYVSRQLQRHPTMRAFHR
LIDYQLAEAEDGRARESLQLLRDMVGEQIRAKPRYRCLKCGFTPHSLYWHCPSCRAWATIKPIRGLDGQ
>Mature_389_residues
MLELLFLLLPVAAAYGWYMGRRSAQQDKQQEANRLSREYVTGVNFLLSNQQDKAVELFLDMLKEDSNTVEAHLTLGNLFR
SRGEVDRAIRIHQSLMESASLSFEQRLLAVQQLGRDYMAAGLYDRAEEMFSQLIDEADFKVFALQQLLLIHQATSDWHKA
IDVAEKLVRLGKDQQRSEIAHFYCELALQAMGSDDLDRAQSLLKKATAADKGCARVSMMRGRVFQALGEPAKAVTAFSLV
LEQDKAFVSEVLPLMEACYQVLEQPAPWHDFLRRCVDEDAGASAELMLGQVIEAQEGLEAAQVYVSRQLQRHPTMRAFHR
LIDYQLAEAEDGRARESLQLLRDMVGEQIRAKPRYRCLKCGFTPHSLYWHCPSCRAWATIKPIRGLDGQ

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=75.4617414248021, Blast_Score=611, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44185; Mature: 44185

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]