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The map label for this gene is potC [H]

Identifier: 238919713

GI number: 238919713

Start: 1752728

End: 1753504

Strand: Reverse

Name: potC [H]

Synonym: NT01EI_1816

Alternate gene names: 238919713

Gene position: 1753504-1752728 (Counterclockwise)

Preceding gene: 238919714

Following gene: 238919712

Centisome position: 46.0

GC content: 60.75

Gene sequence:

>777_bases
ATGCTCGGACGCCTGATGCGCGGGGGCTTCATGTCCCTCATCTACGCTTACTTATATATCCCTATCATTATTTTGATCGC
GAACTCGTTTAACAGCTCGCGCTTCGGCATCAGCTGGAAAAGCTTTACCCTGAGCTGGTACAGCACGCTGATGAACAACG
ATAGCCTGTTGCAGGCGGCGGGCCACTCGATCACCATGGCTGTGCTCTCCGCCACCTTTGCCACCCTGATAGGCTCCCTG
ACCGCCGTGGCGCTGTTCCGCTATCACTTCCGCGGCAAGCCCTTCGTCAGCGGTATGCTGTTTGTGGTCATGATGTCCCC
GGATATCGTCATGGCCATCTCACTGCTGGTGCTGTTTATGCTGCTGGGGGTCTCCCTGGGATTCTGGTCCCTGCTGTTCT
CGCACATTACCTTCTGCCTGCCCTTCGTGGTGGTCACCGTCTACTCCCGTCTGCGGGGCTTTGACGTCCGCATGCTGGAG
GCCGCCCGCGATCTCGGCGCCAGCGAGCTGGTTATCCTGCGCAAAATCCTGCTGCCACTGGCCATGCCGGCGGTGGCCGC
GGGCTGGCTGCTGAGCTTCACACTGTCGATGGACGATGTCGTGGTCTCCTCCTTTGTCACCGGGCCGGGCTATGAGATCC
TGCCGCTGAAAATCTACTCGATGGTCAAGGTGGGGGTCTCTCCGGAGGTCAACGCCCTGGCCACCATCCTGCTGGCGCTG
TCGCTGCTGCTGGTGCTCGCCAGCCAGCTGATCCTGCGCGACCGCACCCGCAGCTAG

Upstream 100 bases:

>100_bases
ATTATAAAATTTTGTCGAATGGTTTGGAGAAGATAACAAAATTGTCTAATCTGCATAAGTATAACGCGTGCGTATGCCGC
GCCGCCCGGGAGGATCTGCC

Downstream 100 bases:

>100_bases
TCTCAAGGCAGGCGGCCTCTACGCCGCCTGCCTTGCATCGTCCCCCTTTCCGGGAGGCCAATTATCTTTTTTGTTACCGC
ATTTATCTTCGGCGATTTAA

Product: spermidine/putrescine ABC transporter membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLGRLMRGGFMSLIYAYLYIPIIILIANSFNSSRFGISWKSFTLSWYSTLMNNDSLLQAAGHSITMAVLSATFATLIGSL
TAVALFRYHFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGVSLGFWSLLFSHITFCLPFVVVTVYSRLRGFDVRMLE
AARDLGASELVILRKILLPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLAL
SLLLVLASQLILRDRTRS

Sequences:

>Translated_258_residues
MLGRLMRGGFMSLIYAYLYIPIIILIANSFNSSRFGISWKSFTLSWYSTLMNNDSLLQAAGHSITMAVLSATFATLIGSL
TAVALFRYHFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGVSLGFWSLLFSHITFCLPFVVVTVYSRLRGFDVRMLE
AARDLGASELVILRKILLPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLAL
SLLLVLASQLILRDRTRS
>Mature_258_residues
MLGRLMRGGFMSLIYAYLYIPIIILIANSFNSSRFGISWKSFTLSWYSTLMNNDSLLQAAGHSITMAVLSATFATLIGSL
TAVALFRYHFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGVSLGFWSLLFSHITFCLPFVVVTVYSRLRGFDVRMLE
AARDLGASELVILRKILLPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLAL
SLLLVLASQLILRDRTRS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=257, Percent_Identity=87.5486381322957, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1787081, Length=232, Percent_Identity=41.3793103448276, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787714, Length=241, Percent_Identity=30.7053941908714, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28382; Mature: 28382

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]