| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919578
Identifier: 238919578
GI number: 238919578
Start: 1638211
End: 1638711
Strand: Reverse
Name: 238919578
Synonym: NT01EI_1677
Alternate gene names: NA
Gene position: 1638711-1638211 (Counterclockwise)
Preceding gene: 238919580
Following gene: 238919575
Centisome position: 42.98
GC content: 51.1
Gene sequence:
>501_bases ATGGCAAACAGCAAGAAACCTGCGAAAACCTCTATTGGCCTGGATCCAAAACAGTCCGCTGTCCTAGCGGATGCCCTCAA TGCCCTGCTGGCCAACTACCAAATTCTTTATATGAATGTGCGAGGCTATCACTGGAACATCAGTGGACCACAATTTTTTG AACTGCATGTCAAGTTTGAGGAGACCTATAACGATCTGTTGCTCAAGGTCGATGAGCTGGCCGAGCGTATTCTGACGCTG GGATACCGGCCACGCCACGCTTTCAGCGACTATCTACAACAGGCAACGGTAAAAGAGGATGTCAATGTCACCGACGATCG CGGTACCCTACAGGGATTATTGGGCGGCTATGCCCTGCTGCTGCAGCAACAGCGGGAAATTCTGCATCTGGCCACAGAAG CCGACGACGAAGGGACAGTATCACTGATGAGTGACTACATCAAACAGCAGGAAAAACAGGTGTGGATGCTGAATGCCTAT CTGGGCAGTAACCAGCCCTGA
Upstream 100 bases:
>100_bases TCTGGCAGGATGGGTAAAAATTCGGCAAAACTCGCGTTCCCCCGATTGACCCGGTGTCAATCCTGTCTGCATCCACGTAT CACTCAAGGAGAGTCTGCCC
Downstream 100 bases:
>100_bases TAGTCTCCCTATCCTTTACTGACTGAGCCCATAAACTGGGGCAGTCATACCCGGCCTGTCAAGATGGCCTGGGCCGGTAC TCTACCGGACTCAGGCCATC
Product: metalloregulation DNA-binding stress protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MANSKKPAKTSIGLDPKQSAVLADALNALLANYQILYMNVRGYHWNISGPQFFELHVKFEETYNDLLLKVDELAERILTL GYRPRHAFSDYLQQATVKEDVNVTDDRGTLQGLLGGYALLLQQQREILHLATEADDEGTVSLMSDYIKQQEKQVWMLNAY LGSNQP
Sequences:
>Translated_166_residues MANSKKPAKTSIGLDPKQSAVLADALNALLANYQILYMNVRGYHWNISGPQFFELHVKFEETYNDLLLKVDELAERILTL GYRPRHAFSDYLQQATVKEDVNVTDDRGTLQGLLGGYALLLQQQREILHLATEADDEGTVSLMSDYIKQQEKQVWMLNAY LGSNQP >Mature_165_residues ANSKKPAKTSIGLDPKQSAVLADALNALLANYQILYMNVRGYHWNISGPQFFELHVKFEETYNDLLLKVDELAERILTLG YRPRHAFSDYLQQATVKEDVNVTDDRGTLQGLLGGYALLLQQQREILHLATEADDEGTVSLMSDYIKQQEKQVWMLNAYL GSNQP
Specific function: Unknown
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 18819; Mature: 18687
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00818 DPS_1 ; PS00819 DPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANSKKPAKTSIGLDPKQSAVLADALNALLANYQILYMNVRGYHWNISGPQFFELHVKFE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCEEEEEEEEHH ETYNDLLLKVDELAERILTLGYRPRHAFSDYLQQATVKEDVNVTDDRGTLQGLLGGYALL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LQQQREILHLATEADDEGTVSLMSDYIKQQEKQVWMLNAYLGSNQP HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC >Mature Secondary Structure ANSKKPAKTSIGLDPKQSAVLADALNALLANYQILYMNVRGYHWNISGPQFFELHVKFE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCEEEEEEEEHH ETYNDLLLKVDELAERILTLGYRPRHAFSDYLQQATVKEDVNVTDDRGTLQGLLGGYALL HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH LQQQREILHLATEADDEGTVSLMSDYIKQQEKQVWMLNAYLGSNQP HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]