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The map label for this gene is yliF [H]

Identifier: 238919480

GI number: 238919480

Start: 1537087

End: 1538508

Strand: Reverse

Name: yliF [H]

Synonym: NT01EI_1575

Alternate gene names: 238919480

Gene position: 1538508-1537087 (Counterclockwise)

Preceding gene: 238919483

Following gene: 238919477

Centisome position: 40.36

GC content: 52.67

Gene sequence:

>1422_bases
ATGGTTCTGGAAAGGACTTTACGCAGAGCCGTAGCCGGTCTGTTTGTTATTTTATTTATCAGTTCCGGCGCTTTGGTTAT
TTATAGCAGCGCCCGTGAATGGCAGAATATGCGTCTGGTAACATCTGCCATTGTCAATGGCATTTCAAAAAACCAGTTGG
ACAATGATAACCGCAATATCCAACGACGCAGTAGAATTATTGAATATGCCTCTAAGAAAGGCAGCCCAATCCCCGACCTG
TTTTCCGTCGCCCGCGATCTACACTGGGGCAACAGTGTTTATCTGCTGGATGGCGAACACCTGCGGCTGTTGGATAAAAA
CGCCCATGACTGGCTCTCTGATGACAAAAAGCAGCGGCTGATCGCGCAGATGCGCGAACACCAGCAGCGTCAATGGTATG
GTCATCTGGATCGGGGCGAGACTGTGTTACCCTATTTGAAATATACCGCCGGTGACGGAAAGGTCATGCTATTCCTTGTG
GATATTTATGGTCTGAGAAAGGTATTAGATCAGCACAGCGCCACCACCCCGATTTATCTGTATCTGTTTGACGACGACAA
TAAACTCATCACCCGTTCTACCAATGCACCGCAGCTGCTGCCAGACAGCATCCGTGGTGAAAATCTGTGGCATAACAGGC
CATTGGAAATAAAGGTCACCCAGCAGAACGAAGTGCTTAACGGAAAAAAGGCAACACTGGTCGGCTATATTCCGGTCACC
TATCTGTTAAAGCTGATTGGCTTTAACCTACTCTATTTTATTCTATCATTTGGCTGCGCCATTTTTTTCCTGCGCTATTT
TTATAAAAAAATCAAGCGTGAAATAGAACGCGAGCGAGAGGAGTTTCTTTCCGGTAAAACGCCATCACGCCGAAACGGTC
TCTTTTTTAATGACGCTGTCAAGCGGCGCGTCGAGCTGGACAAAAAGGCGCTGCTGCGCGATCCACTGACCAAGCTGTAT
AACCGGCGCAAGTATGATTATGACATCGCCCAGCGTCTCTATCAGCAGCAGCCATTTTACCTGCTGCTGCTGGATCTGGA
TGCCTTTGGCCAGGTAAACGATGATCTGGGACAGGATGAGGGCGATCGCCTGCTGGCACAGCTGGCGGCGGCCTTCGCCC
GCCGTCAGGAGGGCTGGCGCTTTTACCGCATCGGCGGCGATGAATTTGCCGCCCTGCTCGATAAGAAATGCGTACCGGAC
ATCAGCGCGCTGGCGCAATGCTGCAACGCGCTACTGAGCGAGGCCGAACGCTACGGCGCACGGCTTAGCATCGGCGCCAG
CGACAGCGACGAGGCCAGCGAACTGCTGGTTCTACAGACCCTGGCGGACAATCGGCTGTATATCAGCAAGCACCGGGGCA
AACACTGCGTTACCCTGCCGCCCCGACGGGCGGAGGGCGCGCCGCCCCCGCCTCATCAGTAG

Upstream 100 bases:

>100_bases
CATGCGCCTCTCGCAATAGTCCTATTGGTTGGATCCCGTTACCGCTGGTAGCGGCTCGCCAACGCTAGCGCAAGATCACT
GTCTTTATCAGGAGCGTGGA

Downstream 100 bases:

>100_bases
CCACGCGCGACGTCAACCCCCCCTTCTGGGCGCCGCCCGGCCTCGATCGCATGGATATTATCGGCAATATAGTCCATCGC
CACCTGCGGCAGGGTGATCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MVLERTLRRAVAGLFVILFISSGALVIYSSAREWQNMRLVTSAIVNGISKNQLDNDNRNIQRRSRIIEYASKKGSPIPDL
FSVARDLHWGNSVYLLDGEHLRLLDKNAHDWLSDDKKQRLIAQMREHQQRQWYGHLDRGETVLPYLKYTAGDGKVMLFLV
DIYGLRKVLDQHSATTPIYLYLFDDDNKLITRSTNAPQLLPDSIRGENLWHNRPLEIKVTQQNEVLNGKKATLVGYIPVT
YLLKLIGFNLLYFILSFGCAIFFLRYFYKKIKREIEREREEFLSGKTPSRRNGLFFNDAVKRRVELDKKALLRDPLTKLY
NRRKYDYDIAQRLYQQQPFYLLLLDLDAFGQVNDDLGQDEGDRLLAQLAAAFARRQEGWRFYRIGGDEFAALLDKKCVPD
ISALAQCCNALLSEAERYGARLSIGASDSDEASELLVLQTLADNRLYISKHRGKHCVTLPPRRAEGAPPPPHQ

Sequences:

>Translated_473_residues
MVLERTLRRAVAGLFVILFISSGALVIYSSAREWQNMRLVTSAIVNGISKNQLDNDNRNIQRRSRIIEYASKKGSPIPDL
FSVARDLHWGNSVYLLDGEHLRLLDKNAHDWLSDDKKQRLIAQMREHQQRQWYGHLDRGETVLPYLKYTAGDGKVMLFLV
DIYGLRKVLDQHSATTPIYLYLFDDDNKLITRSTNAPQLLPDSIRGENLWHNRPLEIKVTQQNEVLNGKKATLVGYIPVT
YLLKLIGFNLLYFILSFGCAIFFLRYFYKKIKREIEREREEFLSGKTPSRRNGLFFNDAVKRRVELDKKALLRDPLTKLY
NRRKYDYDIAQRLYQQQPFYLLLLDLDAFGQVNDDLGQDEGDRLLAQLAAAFARRQEGWRFYRIGGDEFAALLDKKCVPD
ISALAQCCNALLSEAERYGARLSIGASDSDEASELLVLQTLADNRLYISKHRGKHCVTLPPRRAEGAPPPPHQ
>Mature_473_residues
MVLERTLRRAVAGLFVILFISSGALVIYSSAREWQNMRLVTSAIVNGISKNQLDNDNRNIQRRSRIIEYASKKGSPIPDL
FSVARDLHWGNSVYLLDGEHLRLLDKNAHDWLSDDKKQRLIAQMREHQQRQWYGHLDRGETVLPYLKYTAGDGKVMLFLV
DIYGLRKVLDQHSATTPIYLYLFDDDNKLITRSTNAPQLLPDSIRGENLWHNRPLEIKVTQQNEVLNGKKATLVGYIPVT
YLLKLIGFNLLYFILSFGCAIFFLRYFYKKIKREIEREREEFLSGKTPSRRNGLFFNDAVKRRVELDKKALLRDPLTKLY
NRRKYDYDIAQRLYQQQPFYLLLLDLDAFGQVNDDLGQDEGDRLLAQLAAAFARRQEGWRFYRIGGDEFAALLDKKCVPD
ISALAQCCNALLSEAERYGARLSIGASDSDEASELLVLQTLADNRLYISKHRGKHCVTLPPRRAEGAPPPPHQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=32.0754716981132, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=30.9090909090909, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=34.8101265822785, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=29.3413173652695, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 54525; Mature: 54525

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLERTLRRAVAGLFVILFISSGALVIYSSAREWQNMRLVTSAIVNGISKNQLDNDNRNI
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCHHHHCCCCCCCHH
QRRSRIIEYASKKGSPIPDLFSVARDLHWGNSVYLLDGEHLRLLDKNAHDWLSDDKKQRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHCCHHHHHH
IAQMREHQQRQWYGHLDRGETVLPYLKYTAGDGKVMLFLVDIYGLRKVLDQHSATTPIYL
HHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCEEE
YLFDDDNKLITRSTNAPQLLPDSIRGENLWHNRPLEIKVTQQNEVLNGKKATLVGYIPVT
EEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHH
YLLKLIGFNLLYFILSFGCAIFFLRYFYKKIKREIEREREEFLSGKTPSRRNGLFFNDAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHH
KRRVELDKKALLRDPLTKLYNRRKYDYDIAQRLYQQQPFYLLLLDLDAFGQVNDDLGQDE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
GDRLLAQLAAAFARRQEGWRFYRIGGDEFAALLDKKCVPDISALAQCCNALLSEAERYGA
HHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
RLSIGASDSDEASELLVLQTLADNRLYISKHRGKHCVTLPPRRAEGAPPPPHQ
EEEECCCCCCHHHHHHHHEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLERTLRRAVAGLFVILFISSGALVIYSSAREWQNMRLVTSAIVNGISKNQLDNDNRNI
CCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCHHHHCCCCCCCHH
QRRSRIIEYASKKGSPIPDLFSVARDLHWGNSVYLLDGEHLRLLDKNAHDWLSDDKKQRL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHCCHHHHHH
IAQMREHQQRQWYGHLDRGETVLPYLKYTAGDGKVMLFLVDIYGLRKVLDQHSATTPIYL
HHHHHHHHHHHHHCCCCCCCEEECEEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCEEE
YLFDDDNKLITRSTNAPQLLPDSIRGENLWHNRPLEIKVTQQNEVLNGKKATLVGYIPVT
EEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHH
YLLKLIGFNLLYFILSFGCAIFFLRYFYKKIKREIEREREEFLSGKTPSRRNGLFFNDAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHH
KRRVELDKKALLRDPLTKLYNRRKYDYDIAQRLYQQQPFYLLLLDLDAFGQVNDDLGQDE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCH
GDRLLAQLAAAFARRQEGWRFYRIGGDEFAALLDKKCVPDISALAQCCNALLSEAERYGA
HHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
RLSIGASDSDEASELLVLQTLADNRLYISKHRGKHCVTLPPRRAEGAPPPPHQ
EEEECCCCCCHHHHHHHHEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]