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The map label for this gene is ynjB [H]

Identifier: 238919477

GI number: 238919477

Start: 1533038

End: 1534192

Strand: Reverse

Name: ynjB [H]

Synonym: NT01EI_1573

Alternate gene names: 238919477

Gene position: 1534192-1533038 (Counterclockwise)

Preceding gene: 238919480

Following gene: 238919476

Centisome position: 40.24

GC content: 64.42

Gene sequence:

>1155_bases
TTGCTCCGCGGCGCCGCGGCGCTGTGCCTGGCGTTCACCCTCAACACCCATGCCGCGGATACGCCCTGGGGCACTCATCT
GCAGCGTGCACGCGGTGAAACCGTCTACTTCAACGCCTGGGGCGGCAGTCCACAGGTCAATGACTACCTGGGCTGGGCAG
CCCGACAGGTTAAGCAACGCTACGACATCAATCTGGTGCAGGTTAAGGTGAGCGACATCGCCGAAACTGTCGGCCGTATT
CGGGCAGAGAAAGCTGCGGGAAACCTTGGGCGCGGCAGTGTGGATCTGCTCTGGATCAACGGGAAAAACTTTACTGCGAT
GAAGCGCGCGGGCCTGCTGTATGGCCCCTTCGCCGAACAGTTGCCCAACTGGCGCTGGGTAAACCTGTCGCTGCCGGTGC
GCAGCGACTTCACCGTCGCCACCGAGGGCTATGAGGCGCCCTGGGGCGTCGGCCAGCTGGTGCTGCTCCACGATGCCGCC
GCGCTGCCGGCGCCTCCGGCCGATCCCCAGGCCCTGCTGGCGTATGCCCGTCAGCATCCTGGCCGGGTGACCTACCCGCG
ACCGCCGCAGTTTCACGGCAGCAGCTTTCTAAAAAGCATCCTGATGCAGCTCAATCCGGCGCTGCCGCTGAGCCAGCCCG
TGGATCCACAGACCTTTGCCCGTGACAGCGCTCCGCTGTGGGGCTGGCTGGATCAGATCCATCCTTATCTATGGCGCCAG
GGGCGCGTATTCCCGGTCAGCGACACCCAGCAGCTACAGCTGTTCAATGATGGCGCCCTCGATCTGGCCATCAGCTTCAA
CCCCGGCATGGCGCCCGCAGCGATTGCCGCCGGCGAGGTACCACCCGATACCCAGGCGTACGCCTTTAAGGGCGGCGCCC
TGAGCAACGTGCACTTTCTGGCGATCCCGTTCAATGCCCCGGCCAAAGACGCCGCGCTGGTGGTCATTAACTTCCTGATG
TCGCCCGAGGCACAGGCGCGCAAGGCCGACAGCCAAATCTGGGGCGATCCGACCATTGTAGACGTTACCCACCTGCCGCC
TGAGCAGCGTCGCGCCTTTGGCAAGATGCCAACGCTGTTTGATGCGCTGGCCGAACCGCACCCCTCATGGCAGGAGGCAC
TGGAGGCCGGGTGGCAAAAACGCTACGGGCACTGA

Upstream 100 bases:

>100_bases
GCCGTCCCTTTGTTCCTCCACGCTAGGCGCCGTATCCCCCAGCGATTACAATGGTACCTTCAACACTCCTTCGATAAGGC
GACCCATGCGACTCCCTACT

Downstream 100 bases:

>100_bases
CGCCCCGGCGGCGTAGATGCTGTAAATTACGCCGCCGAATGCGGCGTAATTCACCAGTTTGTTGAATGTTTAGCTAAACA
GTTGGTTTTACGAAAAAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MLRGAAALCLAFTLNTHAADTPWGTHLQRARGETVYFNAWGGSPQVNDYLGWAARQVKQRYDINLVQVKVSDIAETVGRI
RAEKAAGNLGRGSVDLLWINGKNFTAMKRAGLLYGPFAEQLPNWRWVNLSLPVRSDFTVATEGYEAPWGVGQLVLLHDAA
ALPAPPADPQALLAYARQHPGRVTYPRPPQFHGSSFLKSILMQLNPALPLSQPVDPQTFARDSAPLWGWLDQIHPYLWRQ
GRVFPVSDTQQLQLFNDGALDLAISFNPGMAPAAIAAGEVPPDTQAYAFKGGALSNVHFLAIPFNAPAKDAALVVINFLM
SPEAQARKADSQIWGDPTIVDVTHLPPEQRRAFGKMPTLFDALAEPHPSWQEALEAGWQKRYGH

Sequences:

>Translated_384_residues
MLRGAAALCLAFTLNTHAADTPWGTHLQRARGETVYFNAWGGSPQVNDYLGWAARQVKQRYDINLVQVKVSDIAETVGRI
RAEKAAGNLGRGSVDLLWINGKNFTAMKRAGLLYGPFAEQLPNWRWVNLSLPVRSDFTVATEGYEAPWGVGQLVLLHDAA
ALPAPPADPQALLAYARQHPGRVTYPRPPQFHGSSFLKSILMQLNPALPLSQPVDPQTFARDSAPLWGWLDQIHPYLWRQ
GRVFPVSDTQQLQLFNDGALDLAISFNPGMAPAAIAAGEVPPDTQAYAFKGGALSNVHFLAIPFNAPAKDAALVVINFLM
SPEAQARKADSQIWGDPTIVDVTHLPPEQRRAFGKMPTLFDALAEPHPSWQEALEAGWQKRYGH
>Mature_384_residues
MLRGAAALCLAFTLNTHAADTPWGTHLQRARGETVYFNAWGGSPQVNDYLGWAARQVKQRYDINLVQVKVSDIAETVGRI
RAEKAAGNLGRGSVDLLWINGKNFTAMKRAGLLYGPFAEQLPNWRWVNLSLPVRSDFTVATEGYEAPWGVGQLVLLHDAA
ALPAPPADPQALLAYARQHPGRVTYPRPPQFHGSSFLKSILMQLNPALPLSQPVDPQTFARDSAPLWGWLDQIHPYLWRQ
GRVFPVSDTQQLQLFNDGALDLAISFNPGMAPAAIAAGEVPPDTQAYAFKGGALSNVHFLAIPFNAPAKDAALVVINFLM
SPEAQARKADSQIWGDPTIVDVTHLPPEQRRAFGKMPTLFDALAEPHPSWQEALEAGWQKRYGH

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=371, Percent_Identity=49.0566037735849, Blast_Score=336, Evalue=2e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42174; Mature: 42174

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRGAAALCLAFTLNTHAADTPWGTHLQRARGETVYFNAWGGSPQVNDYLGWAARQVKQR
CCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
YDINLVQVKVSDIAETVGRIRAEKAAGNLGRGSVDLLWINGKNFTAMKRAGLLYGPFAEQ
CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHCCCEECCHHHH
LPNWRWVNLSLPVRSDFTVATEGYEAPWGVGQLVLLHDAAALPAPPADPQALLAYARQHP
CCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
GRVTYPRPPQFHGSSFLKSILMQLNPALPLSQPVDPQTFARDSAPLWGWLDQIHPYLWRQ
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC
GRVFPVSDTQQLQLFNDGALDLAISFNPGMAPAAIAAGEVPPDTQAYAFKGGALSNVHFL
CEEEECCCCCEEEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCEEEECCCCCCCEEEE
AIPFNAPAKDAALVVINFLMSPEAQARKADSQIWGDPTIVDVTHLPPEQRRAFGKMPTLF
EEECCCCCCCHHHHHHHHHHCCCHHHHHCCHHHCCCCCEEEEECCCHHHHHHHCCCHHHH
DALAEPHPSWQEALEAGWQKRYGH
HHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRGAAALCLAFTLNTHAADTPWGTHLQRARGETVYFNAWGGSPQVNDYLGWAARQVKQR
CCCHHHEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
YDINLVQVKVSDIAETVGRIRAEKAAGNLGRGSVDLLWINGKNFTAMKRAGLLYGPFAEQ
CCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEHHHHCCCEECCHHHH
LPNWRWVNLSLPVRSDFTVATEGYEAPWGVGQLVLLHDAAALPAPPADPQALLAYARQHP
CCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
GRVTYPRPPQFHGSSFLKSILMQLNPALPLSQPVDPQTFARDSAPLWGWLDQIHPYLWRQ
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCC
GRVFPVSDTQQLQLFNDGALDLAISFNPGMAPAAIAAGEVPPDTQAYAFKGGALSNVHFL
CEEEECCCCCEEEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCEEEECCCCCCCEEEE
AIPFNAPAKDAALVVINFLMSPEAQARKADSQIWGDPTIVDVTHLPPEQRRAFGKMPTLF
EEECCCCCCCHHHHHHHHHHCCCHHHHHCCHHHCCCCCEEEEECCCHHHHHHHCCCHHHH
DALAEPHPSWQEALEAGWQKRYGH
HHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]