| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919458
Identifier: 238919458
GI number: 238919458
Start: 1515430
End: 1516638
Strand: Reverse
Name: 238919458
Synonym: NT01EI_1552
Alternate gene names: NA
Gene position: 1516638-1515430 (Counterclockwise)
Preceding gene: 238919459
Following gene: 238919457
Centisome position: 39.78
GC content: 53.76
Gene sequence:
>1209_bases ATGAAGGCTCGTAAATTCCTTTATTACTCGTTACTGTCCGCAGGAGTTTCACTCCCGTCTGGAAGCGCGCATGGGGATAT TTATTTACAGGATGTTTCATCCATTGACATTCCCCTTGAGTACAAAGAAAGAATAAAACAAGAAATTAGTTTAATAAAAA ACACACAAAATAACAATGGATACCTTGCCACTGTAAAAAAAACAGAACACAAGATTCAGAGAGTTAAACACCCCGCAAAA AACAGCACAAATAAACAGTTAACAACACGCGAAGCAGTTAAATATAATTTAAAAAAAGATAAAACACCTAATATTGATGA TGCAAATAAATCATTAAACAGCACTCTTGTGCATCAAAACACATTGCTCGAAGCACAGAACCATACCCTGGCAAAAAAAC TGAGTGCAGAGACGGATAAACGCAGCCAGCTGGAGCAGGCGCTGACCACAGCCCGGGCGCAGGCCTCGCAGGCACAGGCC CAGCTGGCACCGTTGCAGGCCCGCAGCACCGAGCAGGAAAAACTCACCCGGGAGACCGCTGCCTTACAGCAGCGGCTGGA TACGCTCACCACCCAAAACCATGCTCTGGAAAAAAACCTGAGTGCAGAGACGGATAAACGCAGCCAGCTGGAGCAGGCAC TGACCACAGCCCGGGCGCAGGCCTCGCAGGCACAGGCCCAGCTGGCACCGTTGCAGGCCCGCAGCACCGAGCAGGAAAAA CTCACCCGGGAGACCGCTGCCTTACAGCAGCGGCTGGATACGCTCACCACCCAAAACCACGCTCTGGAAAAAAACCTGAG TGCAGAGACGGATAAACGCAGCCAGCTGGAGCAGGCACTGACCACAGCCCGGGCGCAGGCCTCGCAGGCACAGGCCCAGC TGGCACCGTTGCAGGCCCGCAGCACCGAGCAGGAAAAACTCACCCGGGAGACCGCTGCCTTACAGCAGCGGCTGGATACG CTCACCACCCAAAACCATGCTCTGGAAAAAAACCTGAGTGCAGAGACGGATAAACGCAGCCAGCTGGAGCAGGCGCTGAC CACAGCCCGGGCACAGGCCTCGCAGGCACAGGCCAAGCTGGCACCGTTGCAGGCCCACAGCACCGAGCAGGAAAAACTCA CCCGGGAGACCGCTGCCTTACAGCAGCGGCTGGATACGCTCACCACCCAACCATGCTCTGGAAAAAAACCTGAGTGCAGA GACGGATAA
Upstream 100 bases:
>100_bases TACTCATTGGATGCATCGTCGATTTTTAACAGCAGATAGTATTATTGCTCTTTTGGGCTATGCTTTGACCATAGCGTAGA CTTCATATTGGGAGCATAGG
Downstream 100 bases:
>100_bases ACGCAGCCAGCTGGAGCAGGCGCTGACCACAGCCCGGGCGCAGGCCTCGCAGGCACAGGCCCAGCTGGCACCGTTGCAGG CCCGCAGCACCGAGCAGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MKARKFLYYSLLSAGVSLPSGSAHGDIYLQDVSSIDIPLEYKERIKQEISLIKNTQNNNGYLATVKKTEHKIQRVKHPAK NSTNKQLTTREAVKYNLKKDKTPNIDDANKSLNSTLVHQNTLLEAQNHTLAKKLSAETDKRSQLEQALTTARAQASQAQA QLAPLQARSTEQEKLTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEK LTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEKLTRETAALQQRLDT LTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAKLAPLQAHSTEQEKLTRETAALQQRLDTLTTQPCSGKKPECR DG
Sequences:
>Translated_402_residues MKARKFLYYSLLSAGVSLPSGSAHGDIYLQDVSSIDIPLEYKERIKQEISLIKNTQNNNGYLATVKKTEHKIQRVKHPAK NSTNKQLTTREAVKYNLKKDKTPNIDDANKSLNSTLVHQNTLLEAQNHTLAKKLSAETDKRSQLEQALTTARAQASQAQA QLAPLQARSTEQEKLTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEK LTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEKLTRETAALQQRLDT LTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAKLAPLQAHSTEQEKLTRETAALQQRLDTLTTQPCSGKKPECR DG >Mature_402_residues MKARKFLYYSLLSAGVSLPSGSAHGDIYLQDVSSIDIPLEYKERIKQEISLIKNTQNNNGYLATVKKTEHKIQRVKHPAK NSTNKQLTTREAVKYNLKKDKTPNIDDANKSLNSTLVHQNTLLEAQNHTLAKKLSAETDKRSQLEQALTTARAQASQAQA QLAPLQARSTEQEKLTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEK LTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEKLTRETAALQQRLDT LTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAKLAPLQAHSTEQEKLTRETAALQQRLDTLTTQPCSGKKPECR DG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44620; Mature: 44620
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKARKFLYYSLLSAGVSLPSGSAHGDIYLQDVSSIDIPLEYKERIKQEISLIKNTQNNNG CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC YLATVKKTEHKIQRVKHPAKNSTNKQLTTREAVKYNLKKDKTPNIDDANKSLNSTLVHQN EEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TLLEAQNHTLAKKLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEKLTRETA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQAR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC STEQEKLTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH APLQAHSTEQEKLTRETAALQQRLDTLTTQPCSGKKPECRDG HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKARKFLYYSLLSAGVSLPSGSAHGDIYLQDVSSIDIPLEYKERIKQEISLIKNTQNNNG CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC YLATVKKTEHKIQRVKHPAKNSTNKQLTTREAVKYNLKKDKTPNIDDANKSLNSTLVHQN EEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TLLEAQNHTLAKKLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEKLTRETA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQARSTEQEK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAQLAPLQAR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC STEQEKLTRETAALQQRLDTLTTQNHALEKNLSAETDKRSQLEQALTTARAQASQAQAKL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH APLQAHSTEQEKLTRETAALQQRLDTLTTQPCSGKKPECRDG HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA