| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919435
Identifier: 238919435
GI number: 238919435
Start: 1493685
End: 1494821
Strand: Direct
Name: 238919435
Synonym: NT01EI_1529
Alternate gene names: NA
Gene position: 1493685-1494821 (Clockwise)
Preceding gene: 238919434
Following gene: 238919438
Centisome position: 39.18
GC content: 48.81
Gene sequence:
>1137_bases ATGTATTGCGTAATAGGGGAAAGGCTGCTGCGTTATCTGATGTATGGCGTTTTAGCGCTGTCGTTGATGGCAAAAAGCCA TGCTATCGGGGTGAATCTCACCATTTATAATAATCAGGAGATACGGATTGACTCTGGAGACTCTCCAGAGATCCTGAGCG ACGGTGTGCTGCAAGTTAAGGATAATTACCCTGAGTTATCGGGGTTTGTTCTGTCGGATCTCGGCTCAAACCGAAGCAAC TTGGTGCGCAGAACCAGCCTGTTCAGCGTCACCCTGACCGGGGCGCGCTACGGCAGGTCGATAACCCTGCGGGCCAAGCT GGGTAAGACGATCTACCGACATGACTCTTATTTACGAGCCATTATCGTAGGAAATACCAGTGAGAATAATGGGTGTGCCA ATATCCAGCCGCGGGATACAAAAAATCTACTGCAGGGCTCCGGTCAATTTATTTTTATTGACCCGGGCAGCCATGATTTT ACGGCGGACTGTAGCGCAAAGACCCTTTCTGGTATTTATAGGGATATCGATATTCGTCCTGTGTTTACCTTTGGGGATGC CAGAGTGGTATGGCTGGATATCGATACCCTGACAGCCAGTGATGCCTGGCAATCGCTGCCGCCTGATATTTATAACGGTA GCGTCAGTTTAAATCTGGAGTACATGAGTAATATCAGTACTGGCAGAATTAAAGATCTAAATACCACCACCACCGTCTCG ATACGCAAGCAGGCCTATTTTAGCGGGCTATCCGTGCCCTCAACCAATGTGGCATTCAACACGAGCTATACCCAGGACCA GGTGGTAGGCTACGCCTCCACACCGCTGATTTTACAGGGCTTATTCGATCCTAACTTTGGCCGGATACGCTTTAGCCTGC GCTCTGATAATCAGTTCTCCCTGGGTAATGCTGATGGCAGAAAGATATCTTATCAGGCAGTATTGAACCATGGGACACGG CAGTATCCCTTAAATAAGGATGCGGCCGGTACGGCGCCCATCGAGATAGCCAGTTTAAACAACATCAATCAAATTCCTTT GAACCTGACCTTTCAATTTAATCAGGATAAAGCCCGGCTGACGAGCGGTACCTATCGCGACAGAGTTGTTTTGCTTGCCG AGCTACCGCTATTCTAG
Upstream 100 bases:
>100_bases CGATCGTCTGCAGCGGGCAGGTTACCCTGCTGGTGAGCGTGCCGCTCTGAGAGGTATCGCGGCCCTGAGCCGGCGGTGTG ATGTTATGTCAGGAGGAAGT
Downstream 100 bases:
>100_bases GCGGCCAGAATGGCACGCTGCCAATCTCCCGCGCGTGCTGTCAGACCCCGGTGGAATGGGTTATCAGCCCTCATCATGGG GGCGCTCACTGCGTTATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MYCVIGERLLRYLMYGVLALSLMAKSHAIGVNLTIYNNQEIRIDSGDSPEILSDGVLQVKDNYPELSGFVLSDLGSNRSN LVRRTSLFSVTLTGARYGRSITLRAKLGKTIYRHDSYLRAIIVGNTSENNGCANIQPRDTKNLLQGSGQFIFIDPGSHDF TADCSAKTLSGIYRDIDIRPVFTFGDARVVWLDIDTLTASDAWQSLPPDIYNGSVSLNLEYMSNISTGRIKDLNTTTTVS IRKQAYFSGLSVPSTNVAFNTSYTQDQVVGYASTPLILQGLFDPNFGRIRFSLRSDNQFSLGNADGRKISYQAVLNHGTR QYPLNKDAAGTAPIEIASLNNINQIPLNLTFQFNQDKARLTSGTYRDRVVLLAELPLF
Sequences:
>Translated_378_residues MYCVIGERLLRYLMYGVLALSLMAKSHAIGVNLTIYNNQEIRIDSGDSPEILSDGVLQVKDNYPELSGFVLSDLGSNRSN LVRRTSLFSVTLTGARYGRSITLRAKLGKTIYRHDSYLRAIIVGNTSENNGCANIQPRDTKNLLQGSGQFIFIDPGSHDF TADCSAKTLSGIYRDIDIRPVFTFGDARVVWLDIDTLTASDAWQSLPPDIYNGSVSLNLEYMSNISTGRIKDLNTTTTVS IRKQAYFSGLSVPSTNVAFNTSYTQDQVVGYASTPLILQGLFDPNFGRIRFSLRSDNQFSLGNADGRKISYQAVLNHGTR QYPLNKDAAGTAPIEIASLNNINQIPLNLTFQFNQDKARLTSGTYRDRVVLLAELPLF >Mature_378_residues MYCVIGERLLRYLMYGVLALSLMAKSHAIGVNLTIYNNQEIRIDSGDSPEILSDGVLQVKDNYPELSGFVLSDLGSNRSN LVRRTSLFSVTLTGARYGRSITLRAKLGKTIYRHDSYLRAIIVGNTSENNGCANIQPRDTKNLLQGSGQFIFIDPGSHDF TADCSAKTLSGIYRDIDIRPVFTFGDARVVWLDIDTLTASDAWQSLPPDIYNGSVSLNLEYMSNISTGRIKDLNTTTTVS IRKQAYFSGLSVPSTNVAFNTSYTQDQVVGYASTPLILQGLFDPNFGRIRFSLRSDNQFSLGNADGRKISYQAVLNHGTR QYPLNKDAAGTAPIEIASLNNINQIPLNLTFQFNQDKARLTSGTYRDRVVLLAELPLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41831; Mature: 41831
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYCVIGERLLRYLMYGVLALSLMAKSHAIGVNLTIYNNQEIRIDSGDSPEILSDGVLQVK CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCCCCHHCCCEEEEE DNYPELSGFVLSDLGSNRSNLVRRTSLFSVTLTGARYGRSITLRAKLGKTIYRHDSYLRA CCCCCCCCEEEECCCCCHHHHEEEEEEEEEEEECCCCCCEEEEEEHHCCHHHCCCCEEEE IIVGNTSENNGCANIQPRDTKNLLQGSGQFIFIDPGSHDFTADCSAKTLSGIYRDIDIRP EEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEEE VFTFGDARVVWLDIDTLTASDAWQSLPPDIYNGSVSLNLEYMSNISTGRIKDLNTTTTVS EEEECCCEEEEEEEEECCCCCHHHHCCCCHHCCEEEEEEEECCCCCCCCEEECCCEEEEE IRKQAYFSGLSVPSTNVAFNTSYTQDQVVGYASTPLILQGLFDPNFGRIRFSLRSDNQFS EEHHHHHCCCCCCCCCEEEECCCCHHHEEEECCCCEEEEECCCCCCCEEEEEEECCCEEE LGNADGRKISYQAVLNHGTRQYPLNKDAAGTAPIEIASLNNINQIPLNLTFQFNQDKARL CCCCCCCEEEEEEHCCCCCEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEE TSGTYRDRVVLLAELPLF CCCCCCCEEEEEEECCCC >Mature Secondary Structure MYCVIGERLLRYLMYGVLALSLMAKSHAIGVNLTIYNNQEIRIDSGDSPEILSDGVLQVK CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCCCCCCHHCCCEEEEE DNYPELSGFVLSDLGSNRSNLVRRTSLFSVTLTGARYGRSITLRAKLGKTIYRHDSYLRA CCCCCCCCEEEECCCCCHHHHEEEEEEEEEEEECCCCCCEEEEEEHHCCHHHCCCCEEEE IIVGNTSENNGCANIQPRDTKNLLQGSGQFIFIDPGSHDFTADCSAKTLSGIYRDIDIRP EEEECCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEEE VFTFGDARVVWLDIDTLTASDAWQSLPPDIYNGSVSLNLEYMSNISTGRIKDLNTTTTVS EEEECCCEEEEEEEEECCCCCHHHHCCCCHHCCEEEEEEEECCCCCCCCEEECCCEEEEE IRKQAYFSGLSVPSTNVAFNTSYTQDQVVGYASTPLILQGLFDPNFGRIRFSLRSDNQFS EEHHHHHCCCCCCCCCEEEECCCCHHHEEEECCCCEEEEECCCCCCCEEEEEEECCCEEE LGNADGRKISYQAVLNHGTRQYPLNKDAAGTAPIEIASLNNINQIPLNLTFQFNQDKARL CCCCCCCEEEEEEHCCCCCEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCEE TSGTYRDRVVLLAELPLF CCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA