| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919386
Identifier: 238919386
GI number: 238919386
Start: 1454397
End: 1455134
Strand: Direct
Name: 238919386
Synonym: NT01EI_1480
Alternate gene names: NA
Gene position: 1454397-1455134 (Clockwise)
Preceding gene: 238919385
Following gene: 238919387
Centisome position: 38.15
GC content: 60.7
Gene sequence:
>738_bases ATGACGTTATTGCCGGAAGGATTGGCCGCTTTTTTGACCGGCTGGCAGCAGGCCAGGACTCCGGACTTATTTCCCGCACG GGCGCTTTGCCCACCGCCGTCGCCGGGCGGGCTGAACACATTTTTTACCCACTGGAAACAGCATCAGCCACTGGCTGTAC AACATGCGCTGTTTTTTGATCCCTGGGCGGTGGCCGGAGTGGCCCGTAAAGAGGTGCCAACCACGGCAGTTCTGGCCTGG CTGCTTAATCCTCAGGGCAGCCACGGTTTTGGCGGCATCATGCTCAGTGCCCTGATGAGCCACCTTTCCCGGCAATCCGC GGGTCGGATACCGGCCAGCTATGGCCGCTATTGTCACACCAGTGTGGAGGATTGCCCGACGGGGGACAGCCGTAACCGGG TGGATTTGGTGCTGGATAGCGAGAGATGCTATCTGCTGGTGGAGGTGAAGATTAGTGCGCCGGAGCAGGAGGAACAATTG CAGCGGTATGCCCAGGAGGCCAGTGCCCGCGCCGGGAGCCGCGCCTGGGCCGTGCTGTTTTTAACCCCCGGGGGTTGCGC CGGGCACTCACAGGGGGGAGATGATACGGCCTATCTGAACCTGTCATGGCGGCAGCTGTCATCCCTGTTGGTGCCGGTAT TGGATGCCTATCAGGGCACTGCTGCCCATAAATCCCCCCAGCGTCACATGGCCGAGCAATCGGCCGCCTGTTTTATCCGC CGTATGGCATCTCTTTAA
Upstream 100 bases:
>100_bases TTTACCCGATGCCGGCTGAGACCGGGAACCCATGGTCCACAACACCGCGCGGGCATAAAGCGTGCGCGGGTGACAGGTGT GAGTGAGGAGAATGCAGAAG
Downstream 100 bases:
>100_bases GGATTTTGGAATGGAAAACGATCGTCAGGCTGGCGCATTGCTGCTGTCACAGCTGAAATTGGTCAATGAAGCTACGGTAT ATTTCGAAACGGTAATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTLLPEGLAAFLTGWQQARTPDLFPARALCPPPSPGGLNTFFTHWKQHQPLAVQHALFFDPWAVAGVARKEVPTTAVLAW LLNPQGSHGFGGIMLSALMSHLSRQSAGRIPASYGRYCHTSVEDCPTGDSRNRVDLVLDSERCYLLVEVKISAPEQEEQL QRYAQEASARAGSRAWAVLFLTPGGCAGHSQGGDDTAYLNLSWRQLSSLLVPVLDAYQGTAAHKSPQRHMAEQSAACFIR RMASL
Sequences:
>Translated_245_residues MTLLPEGLAAFLTGWQQARTPDLFPARALCPPPSPGGLNTFFTHWKQHQPLAVQHALFFDPWAVAGVARKEVPTTAVLAW LLNPQGSHGFGGIMLSALMSHLSRQSAGRIPASYGRYCHTSVEDCPTGDSRNRVDLVLDSERCYLLVEVKISAPEQEEQL QRYAQEASARAGSRAWAVLFLTPGGCAGHSQGGDDTAYLNLSWRQLSSLLVPVLDAYQGTAAHKSPQRHMAEQSAACFIR RMASL >Mature_244_residues TLLPEGLAAFLTGWQQARTPDLFPARALCPPPSPGGLNTFFTHWKQHQPLAVQHALFFDPWAVAGVARKEVPTTAVLAWL LNPQGSHGFGGIMLSALMSHLSRQSAGRIPASYGRYCHTSVEDCPTGDSRNRVDLVLDSERCYLLVEVKISAPEQEEQLQ RYAQEASARAGSRAWAVLFLTPGGCAGHSQGGDDTAYLNLSWRQLSSLLVPVLDAYQGTAAHKSPQRHMAEQSAACFIRR MASL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26710; Mature: 26578
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLPEGLAAFLTGWQQARTPDLFPARALCPPPSPGGLNTFFTHWKQHQPLAVQHALFFD CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCC PWAVAGVARKEVPTTAVLAWLLNPQGSHGFGGIMLSALMSHLSRQSAGRIPASYGRYCHT CHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC SVEDCPTGDSRNRVDLVLDSERCYLLVEVKISAPEQEEQLQRYAQEASARAGSRAWAVLF CCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEE LTPGGCAGHSQGGDDTAYLNLSWRQLSSLLVPVLDAYQGTAAHKSPQRHMAEQSAACFIR ECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RMASL HHHCC >Mature Secondary Structure TLLPEGLAAFLTGWQQARTPDLFPARALCPPPSPGGLNTFFTHWKQHQPLAVQHALFFD CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCC PWAVAGVARKEVPTTAVLAWLLNPQGSHGFGGIMLSALMSHLSRQSAGRIPASYGRYCHT CHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCC SVEDCPTGDSRNRVDLVLDSERCYLLVEVKISAPEQEEQLQRYAQEASARAGSRAWAVLF CCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEE LTPGGCAGHSQGGDDTAYLNLSWRQLSSLLVPVLDAYQGTAAHKSPQRHMAEQSAACFIR ECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RMASL HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA