| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919346
Identifier: 238919346
GI number: 238919346
Start: 1416156
End: 1417391
Strand: Direct
Name: 238919346
Synonym: NT01EI_1440
Alternate gene names: NA
Gene position: 1416156-1417391 (Clockwise)
Preceding gene: 238919345
Following gene: 238919349
Centisome position: 37.15
GC content: 53.88
Gene sequence:
>1236_bases TTGCCTGATTTTGATATGTTCAATCCAACATCAAAAGCAGGTTACTTTATGAACGAAAAACAGTTGCAGGCTCTGGCTAA CGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGTCAGTTCGATCGCCTGCTGAAGAAAATCAGTGTTGAGGCGG CTCTCAACGCCGAAATGTCCCACCATCTGGGCTACGGTAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTAT TCCACAAAGACCGTTACCACCGGTGATGGCCCTCTGGAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCA ACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGTTGTACGCCAAAGGGATGACCACCC GCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGCCGTA ATGGAGCAGGTTACCGAATGGCAGAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAA GGTCCGGCAGGACAGTCGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGC TGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGTTCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAAC GATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATACGGTGTATCCGGAAGCCCGCATCCA GCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAAGCCGTCACCCGCGACCTGA AAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCATGCGCTGGAAGCGTTCGCCAGCGCATGGGACAACCGCTAC CCGCAGATAAGCCGTAGCTGGCAGACAAACTGGGCTAACCTGGCGACGTTCTTCGCTTACCCGGCAGACATCCGCAAGGT GATCTACACAACGAATGCTATCGAGTCGCTGAACAGCGTGATCCGGCATGCCATCAAAAAGCGTAAGGTGTTCCCGAACG GACGAAGCAGTGAAAAAGGTGGTGTGGTTAGCGATCCAGGCGGCATCACAGAAATGGACCATGCCGCTGAGGGACTGGCG TATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGA
Upstream 100 bases:
>100_bases GATGCGGGATCAGACCTGCCCGTCGCGGTGGAAGCTAAGACGCTGTTCAACGTAGGCTTTGACATGGGCCTCCAACGAGC CTGTACATAAATTTGTGTAA
Downstream 100 bases:
>100_bases TCGTCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGAATCGTGTACAGGGTCCCTCCAACCGGTGGATTTTCTCAT CCACGCGCTGCAGCAGGTAC
Product: transposase, Mutator family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYGKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAWDNRY PQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPNGRSSEKGGVVSDPGGITEMDHAAEGLA YGNEPLYYRVR
Sequences:
>Translated_411_residues MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYGKNQPKPGANSRNGY STKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAV MEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAWDNRY PQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPNGRSSEKGGVVSDPGGITEMDHAAEGLA YGNEPLYYRVR >Mature_410_residues PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYGKNQPKPGANSRNGYS TKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVM EQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLND ILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAWDNRYP QISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPNGRSSEKGGVVSDPGGITEMDHAAEGLAY GNEPLYYRVR
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 46132; Mature: 46001
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYGKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCCHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAP HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC TEDAGQHALEAFASAWDNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSV CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IRHAIKKRKVFPNGRSSEKGGVVSDPGGITEMDHAAEGLAYGNEPLYYRVR HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEC >Mature Secondary Structure PDFDMFNPTSKAGYFMNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH HHLGYGKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRITGMD HHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHCCCCCEECCCC NQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVY HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGMWLAENEGAKFWLNVLTELKNRGLN HHHHHHHHCCCHHHHHHHEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH DILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAP HHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC TEDAGQHALEAFASAWDNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSV CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH IRHAIKKRKVFPNGRSSEKGGVVSDPGGITEMDHAAEGLAYGNEPLYYRVR HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]